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Protein

Pentatricopeptide repeat-containing protein At5g57250, mitochondrial

Gene

At5g57250

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At5g57250, mitochondrial
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At5g57250
ORF Names:MJB24.6
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

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Araporti
AT5G57250

The Arabidopsis Information Resource

More...
TAIRi
locus:2165585 AT5G57250

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Mitochondrion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a transit peptide.<p><a href='/help/transit' target='_top'>More...</a></p>Transit peptidei1 – 64MitochondrionSequence analysisAdd BLAST64
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000036357165 – 971Pentatricopeptide repeat-containing protein At5g57250, mitochondrialAdd BLAST907

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9LVD3

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

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ExpressionAtlasi
Q9LVD3 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9LVD3 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT5G57250.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
Q9LVD3

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9LVD3

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati101 – 136PPR 1Add BLAST36
Repeati137 – 173PPR 2Add BLAST37
Repeati174 – 208PPR 3Add BLAST35
Repeati211 – 245PPR 4Add BLAST35
Repeati247 – 281PPR 5Add BLAST35
Repeati282 – 316PPR 6Add BLAST35
Repeati317 – 351PPR 7Add BLAST35
Repeati352 – 386PPR 8Add BLAST35
Repeati387 – 421PPR 9Add BLAST35
Repeati422 – 445PPR 10Add BLAST24
Repeati452 – 486PPR 11Add BLAST35
Repeati487 – 521PPR 12Add BLAST35
Repeati522 – 556PPR 13Add BLAST35
Repeati557 – 590PPR 14Add BLAST34
Repeati591 – 625PPR 15Add BLAST35
Repeati626 – 660PPR 16Add BLAST35
Repeati695 – 729PPR 17Add BLAST35
Repeati730 – 764PPR 18Add BLAST35
Repeati765 – 799PPR 19Add BLAST35
Repeati800 – 834PPR 20Add BLAST35
Repeati835 – 869PPR 21Add BLAST35
Repeati870 – 904PPR 22Add BLAST35

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG4197 Eukaryota
ENOG410Z7Z7 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000115647

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9LVD3

KEGG Orthology (KO)

More...
KOi
K17964

Identification of Orthologs from Complete Genome Data

More...
OMAi
GGFCKRN

Database of Orthologous Groups

More...
OrthoDBi
1344243at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9LVD3

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.40.10, 5 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01535 PPR, 2 hits
PF12854 PPR_1, 3 hits
PF13041 PPR_2, 6 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48452 SSF48452, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR00756 PPR, 14 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51375 PPR, 23 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LVD3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKLYPRTSSG LFSLQSLLKS GFSPTLNSID RFLRYLYRLQ KFNCILQFYS
60 70 80 90 100
QLDSKQININ HRIYSIVSWA FLNLNRYEDA EKFINIHISK ASIFPRTHML
110 120 130 140 150
DSLIHGFSIT RDDPSKGLLI LRDCLRNHGA FPSSLTFCSL IYRFVEKGEM
160 170 180 190 200
DNAIEVLEMM TNKNVNYPFD NFVCSAVISG FCKIGKPELA LGFFESAVDS
210 220 230 240 250
GVLVPNLVTY TTLVSALCQL GKVDEVRDLV RRLEDEGFEF DCVFYSNWIH
260 270 280 290 300
GYFKGGALVD ALMQDREMVE KGMNRDVVSY SILIDGLSKE GNVEEALGLL
310 320 330 340 350
GKMIKEGVEP NLITYTAIIR GLCKMGKLEE AFVLFNRILS VGIEVDEFLY
360 370 380 390 400
VTLIDGICRK GNLNRAFSML GDMEQRGIQP SILTYNTVIN GLCMAGRVSE
410 420 430 440 450
ADEVSKGVVG DVITYSTLLD SYIKVQNIDA VLEIRRRFLE AKIPMDLVMC
460 470 480 490 500
NILLKAFLLM GAYGEADALY RAMPEMDLTP DTATYATMIK GYCKTGQIEE
510 520 530 540 550
ALEMFNELRK SSVSAAVCYN RIIDALCKKG MLDTATEVLI ELWEKGLYLD
560 570 580 590 600
IHTSRTLLHS IHANGGDKGI LGLVYGLEQL NSDVCLGMLN DAILLLCKRG
610 620 630 640 650
SFEAAIEVYM IMRRKGLTVT FPSTILKTLV DNLRSLDAYL LVVNAGETTL
660 670 680 690 700
SSMDVIDYTI IINGLCKEGF LVKALNLCSF AKSRGVTLNT ITYNSLINGL
710 720 730 740 750
CQQGCLVEAL RLFDSLENIG LVPSEVTYGI LIDNLCKEGL FLDAEKLLDS
760 770 780 790 800
MVSKGLVPNI IIYNSIVDGY CKLGQTEDAM RVVSRKMMGR VTPDAFTVSS
810 820 830 840 850
MIKGYCKKGD MEEALSVFTE FKDKNISADF FGFLFLIKGF CTKGRMEEAR
860 870 880 890 900
GLLREMLVSE SVVKLINRVD AELAESESIR GFLVELCEQG RVPQAIKILD
910 920 930 940 950
EISSTIYPSG KNLGSYQRLQ FLNDVNEEEI KKKDYVHDFH SLHSTVSSLC
960 970
TSGKLEQANE FVMSVLSCMP R
Length:971
Mass (Da):108,619
Last modified:February 10, 2009 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iE1D3878E514B3ACB
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAA96948 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AB019233 Genomic DNA Translation: BAA96948.1 Different initiation.
CP002688 Genomic DNA Translation: AED96871.1

NCBI Reference Sequences

More...
RefSeqi
NP_001078759.1, NM_001085290.2

UniGene gene-oriented nucleotide sequence clusters

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UniGenei
At.29340
At.69268

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT5G57250.1; AT5G57250.1; AT5G57250

Database of genes from NCBI RefSeq genomes

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GeneIDi
5008310

Gramene; a comparative resource for plants

More...
Gramenei
AT5G57250.1; AT5G57250.1; AT5G57250

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
ath:AT5G57250

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

<p>This subsection of the <a href="http://www.uniprot.org/manual/cross_references_section">Cross-references</a> section provides links to various web resources that are relevant for a specific protein.<p><a href='/help/web_resource' target='_top'>More...</a></p>Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB019233 Genomic DNA Translation: BAA96948.1 Different initiation.
CP002688 Genomic DNA Translation: AED96871.1
RefSeqiNP_001078759.1, NM_001085290.2
UniGeneiAt.29340
At.69268

3D structure databases

ProteinModelPortaliQ9LVD3
SMRiQ9LVD3
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G57250.1

Proteomic databases

PaxDbiQ9LVD3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G57250.1; AT5G57250.1; AT5G57250
GeneIDi5008310
GrameneiAT5G57250.1; AT5G57250.1; AT5G57250
KEGGiath:AT5G57250

Organism-specific databases

AraportiAT5G57250
TAIRilocus:2165585 AT5G57250

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000115647
InParanoidiQ9LVD3
KOiK17964
OMAiGGFCKRN
OrthoDBi1344243at2759
PhylomeDBiQ9LVD3

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9LVD3

Gene expression databases

ExpressionAtlasiQ9LVD3 baseline and differential
GenevisibleiQ9LVD3 AT

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 2 hits
PF12854 PPR_1, 3 hits
PF13041 PPR_2, 6 hits
SUPFAMiSSF48452 SSF48452, 1 hit
TIGRFAMsiTIGR00756 PPR, 14 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 23 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPP434_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9LVD3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: February 10, 2009
Last modified: January 16, 2019
This is version 93 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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