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Protein

60S acidic ribosomal protein P3-2

Gene

RPP3B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Plays an important role in the elongation step of protein synthesis.By similarity

GO - Molecular functioni

  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
60S acidic ribosomal protein P3-2
Gene namesi
Name:RPP3B
Ordered Locus Names:At5g57290
ORF Names:MJB24.10
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G57290
TAIRilocus:2165620 AT5G57290

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002457801 – 12060S acidic ribosomal protein P3-2Add BLAST120

Proteomic databases

PaxDbiQ9LVC9
PRIDEiQ9LVC9

PTM databases

iPTMnetiQ9LVC9

Expressioni

Gene expression databases

ExpressionAtlasiQ9LVC9 baseline and differential
GenevisibleiQ9LVC9 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G57290.1

Structurei

3D structure databases

ProteinModelPortaliQ9LVC9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG410J3GP Eukaryota
ENOG41124K7 LUCA
HOGENOMiHOG000064577
InParanoidiQ9LVC9
KOiK02942
OMAiFSHHESM
OrthoDBiEOG09360YWH
PhylomeDBiQ9LVC9

Family and domain databases

HAMAPiMF_01478 Ribosomal_L12_arch, 1 hit
InterProiView protein in InterPro
IPR027534 Ribosomal_L12

Sequence (1+)i

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket
Note: A number of isoforms are produced. According to EST sequences.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q9LVC9-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MGVFSFVCKS KGGEWTAKQH EGDLEASASS TYDLQRKLVQ TALSADSSGG
60 70 80 90 100
VQSSFSLVSP TSAVFVVVIG GGGGGGFAAG GGAAAGGGGG GEAAAATKEE
110 120
EKKKEESEEE EGDFGFDLFG
Length:120
Mass (Da):11,863
Last modified:October 1, 2000 - v1
Checksum:iAD69182FDE09E191
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
B3H4N7B3H4N7_ARATH
60S acidic ribosomal protein family
MJB24.10 MJB24_10, At5g57290
119Annotation score:
F4KAM0F4KAM0_ARATH
60S acidic ribosomal protein family
MJB24.10 MJB24_10, At5g57290
89Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB019233 Genomic DNA Translation: BAA96952.1
CP002688 Genomic DNA Translation: AED96877.1
BT025594 mRNA Translation: ABF59012.1
AY088631 mRNA Translation: AAM66953.1
RefSeqiNP_200539.1, NM_125111.5 [Q9LVC9-1]
UniGeneiAt.20208
At.68067

Genome annotation databases

EnsemblPlantsiAT5G57290.1; AT5G57290.1; AT5G57290 [Q9LVC9-1]
GeneIDi835834
GrameneiAT5G57290.1; AT5G57290.1; AT5G57290 [Q9LVC9-1]
KEGGiath:AT5G57290

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB019233 Genomic DNA Translation: BAA96952.1
CP002688 Genomic DNA Translation: AED96877.1
BT025594 mRNA Translation: ABF59012.1
AY088631 mRNA Translation: AAM66953.1
RefSeqiNP_200539.1, NM_125111.5 [Q9LVC9-1]
UniGeneiAt.20208
At.68067

3D structure databases

ProteinModelPortaliQ9LVC9
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G57290.1

PTM databases

iPTMnetiQ9LVC9

Proteomic databases

PaxDbiQ9LVC9
PRIDEiQ9LVC9

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G57290.1; AT5G57290.1; AT5G57290 [Q9LVC9-1]
GeneIDi835834
GrameneiAT5G57290.1; AT5G57290.1; AT5G57290 [Q9LVC9-1]
KEGGiath:AT5G57290

Organism-specific databases

AraportiAT5G57290
TAIRilocus:2165620 AT5G57290

Phylogenomic databases

eggNOGiENOG410J3GP Eukaryota
ENOG41124K7 LUCA
HOGENOMiHOG000064577
InParanoidiQ9LVC9
KOiK02942
OMAiFSHHESM
OrthoDBiEOG09360YWH
PhylomeDBiQ9LVC9

Miscellaneous databases

PROiPR:Q9LVC9

Gene expression databases

ExpressionAtlasiQ9LVC9 baseline and differential
GenevisibleiQ9LVC9 AT

Family and domain databases

HAMAPiMF_01478 Ribosomal_L12_arch, 1 hit
InterProiView protein in InterPro
IPR027534 Ribosomal_L12
ProtoNetiSearch...

Entry informationi

Entry nameiRLA32_ARATH
AccessioniPrimary (citable) accession number: Q9LVC9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 11, 2006
Last sequence update: October 1, 2000
Last modified: May 23, 2018
This is version 107 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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