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Protein

Pentatricopeptide repeat-containing protein At3g22690

Gene

PCMP-H56

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

  • RNA modification Source: GO_Central

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At3g22690
Gene namesi
Name:PCMP-H56
Ordered Locus Names:At3g22690
ORF Names:MWI23.6
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G22690

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003561081 – 842Pentatricopeptide repeat-containing protein At3g22690Add BLAST842

Proteomic databases

PaxDbiQ9LUJ2
PRIDEiQ9LUJ2

Expressioni

Gene expression databases

ExpressionAtlasiQ9LUJ2 baseline and differential
GenevisibleiQ9LUJ2 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G22690.1

Structurei

3D structure databases

ProteinModelPortaliQ9LUJ2
SMRiQ9LUJ2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati98 – 132PPR 1Add BLAST35
Repeati133 – 167PPR 2Add BLAST35
Repeati168 – 202PPR 3Add BLAST35
Repeati203 – 234PPR 4Add BLAST32
Repeati235 – 269PPR 5Add BLAST35
Repeati270 – 300PPR 6Add BLAST31
Repeati301 – 335PPR 7Add BLAST35
Repeati336 – 370PPR 8Add BLAST35
Repeati371 – 401PPR 9Add BLAST31
Repeati402 – 436PPR 10Add BLAST35
Repeati437 – 463PPR 11Add BLAST27
Repeati469 – 503PPR 12Add BLAST35
Repeati504 – 534PPR 13Add BLAST31
Repeati535 – 569PPR 14Add BLAST35
Repeati570 – 605PPR 15Add BLAST36
Repeati606 – 636PPR 16Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni641 – 716Type E motifAdd BLAST76
Regioni717 – 747Type E(+) motifAdd BLAST31
Regioni748 – 842Type DYW motifAdd BLAST95

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi17 – 21Poly-Thr5

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9LUJ2
OMAiIHFYAEC
PhylomeDBiQ9LUJ2

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 6 hits
PF13041 PPR_2, 3 hits
SUPFAMiSSF48452 SSF48452, 1 hit
TIGRFAMsiTIGR00756 PPR, 7 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 17 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket
Note: A number of isoforms are produced. According to EST sequences.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q9LUJ2-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MAMLGNVLHL SPMVLATTTT TKPSLLNQSK CTKATPSSLK NCKTIDELKM
60 70 80 90 100
FHRSLTKQGL DNDVSTITKL VARSCELGTR ESLSFAKEVF ENSESYGTCF
110 120 130 140 150
MYNSLIRGYA SSGLCNEAIL LFLRMMNSGI SPDKYTFPFG LSACAKSRAK
160 170 180 190 200
GNGIQIHGLI VKMGYAKDLF VQNSLVHFYA ECGELDSARK VFDEMSERNV
210 220 230 240 250
VSWTSMICGY ARRDFAKDAV DLFFRMVRDE EVTPNSVTMV CVISACAKLE
260 270 280 290 300
DLETGEKVYA FIRNSGIEVN DLMVSALVDM YMKCNAIDVA KRLFDEYGAS
310 320 330 340 350
NLDLCNAMAS NYVRQGLTRE ALGVFNLMMD SGVRPDRISM LSAISSCSQL
360 370 380 390 400
RNILWGKSCH GYVLRNGFES WDNICNALID MYMKCHRQDT AFRIFDRMSN
410 420 430 440 450
KTVVTWNSIV AGYVENGEVD AAWETFETMP EKNIVSWNTI ISGLVQGSLF
460 470 480 490 500
EEAIEVFCSM QSQEGVNADG VTMMSIASAC GHLGALDLAK WIYYYIEKNG
510 520 530 540 550
IQLDVRLGTT LVDMFSRCGD PESAMSIFNS LTNRDVSAWT AAIGAMAMAG
560 570 580 590 600
NAERAIELFD DMIEQGLKPD GVAFVGALTA CSHGGLVQQG KEIFYSMLKL
610 620 630 640 650
HGVSPEDVHY GCMVDLLGRA GLLEEAVQLI EDMPMEPNDV IWNSLLAACR
660 670 680 690 700
VQGNVEMAAY AAEKIQVLAP ERTGSYVLLS NVYASAGRWN DMAKVRLSMK
710 720 730 740 750
EKGLRKPPGT SSIQIRGKTH EFTSGDESHP EMPNIEAMLD EVSQRASHLG
760 770 780 790 800
HVPDLSNVLM DVDEKEKIFM LSRHSEKLAM AYGLISSNKG TTIRIVKNLR
810 820 830 840
VCSDCHSFAK FASKVYNREI ILRDNNRFHY IRQGKCSCGD FW
Length:842
Mass (Da):93,462
Last modified:October 1, 2000 - v1
Checksum:i0FB98FF0719F946C
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F4J1L5F4J1L5_ARATH
LOW protein: PPR containing-like pr...
At3g22690
938Annotation score:
A0A1I9LQP2A0A1I9LQP2_ARATH
LOW protein: PPR containing-like pr...
At3g22690
811Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB022223 Genomic DNA Translation: BAB01244.1
CP002686 Genomic DNA Translation: AEE76666.1
RefSeqiNP_001189950.1, NM_001203021.2 [Q9LUJ2-1]
UniGeneiAt.53441

Genome annotation databases

EnsemblPlantsiAT3G22690.2; AT3G22690.2; AT3G22690 [Q9LUJ2-1]
GeneIDi821840
GrameneiAT3G22690.2; AT3G22690.2; AT3G22690 [Q9LUJ2-1]
KEGGiath:AT3G22690

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB022223 Genomic DNA Translation: BAB01244.1
CP002686 Genomic DNA Translation: AEE76666.1
RefSeqiNP_001189950.1, NM_001203021.2 [Q9LUJ2-1]
UniGeneiAt.53441

3D structure databases

ProteinModelPortaliQ9LUJ2
SMRiQ9LUJ2
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G22690.1

Proteomic databases

PaxDbiQ9LUJ2
PRIDEiQ9LUJ2

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G22690.2; AT3G22690.2; AT3G22690 [Q9LUJ2-1]
GeneIDi821840
GrameneiAT3G22690.2; AT3G22690.2; AT3G22690 [Q9LUJ2-1]
KEGGiath:AT3G22690

Organism-specific databases

AraportiAT3G22690

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9LUJ2
OMAiIHFYAEC
PhylomeDBiQ9LUJ2

Miscellaneous databases

PROiPR:Q9LUJ2

Gene expression databases

ExpressionAtlasiQ9LUJ2 baseline and differential
GenevisibleiQ9LUJ2 AT

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 6 hits
PF13041 PPR_2, 3 hits
SUPFAMiSSF48452 SSF48452, 1 hit
TIGRFAMsiTIGR00756 PPR, 7 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 17 hits
ProtoNetiSearch...

Entry informationi

Entry nameiPP249_ARATH
AccessioniPrimary (citable) accession number: Q9LUJ2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: October 1, 2000
Last modified: November 7, 2018
This is version 99 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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