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Protein

Putative pectate lyase 11

Gene

At3g27400

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

  • Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends. EC:4.2.2.2

<p>This subsection of the ‘Function’ section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Ca2+By similarityNote: Binds 1 Ca2+ ion. Required for its activity.By similarity

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section describes the metabolic pathway(s) associated with a protein.<p><a href='/help/pathway' target='_top'>More...</a></p>Pathwayi: pectin degradation

This protein is involved in step 2 of the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin.
Proteins known to be involved in the 5 steps of the subpathway in this organism are:
  1. Pectinesterase (AXX17_At2g22280), Pectinesterase (AXX17_At3g43380), Pectinesterase (AXX17_At3g26070), Pectinesterase (AXX17_At3g10560), Pectinesterase (AXX17_At1g48290), Pectinesterase, Pectinesterase (AXX17_At5g52320), Pectinesterase (AXX17_At1g01970), Pectinesterase (AXX17_At3g36460), Pectinesterase (F14I3.7), Pectinesterase (AXX17_At3g17940), Pectinesterase (AXX17_At1g11920), Pectinesterase, Uncharacterized protein (AXX17_At3g05180), Pectinesterase (AXX17_At5g19650), Pectinesterase (AXX17_At3g53530), Pectinesterase (At1g53840), Plant invertase/pectin methylesterase inhibitor superfamily (At3g49220), Pectinesterase (AXX17_At3g14900), Pectinesterase (AXX17_At2g33420), Pectinesterase, Pectinesterase (AXX17_At4g02900), Pectinesterase (AXX17_At2g42790), Pectinesterase (AXX17_At4g06570), Pectinesterase (AXX17_At5g47900), Pectinesterase (At3g10720), Pectinesterase (AXX17_At3g41380), Pectinesterase (PMEPCRF), Pectinesterase (AXX17_At5g26780), Pectinesterase, Pectinesterase (AXX17_At2g44790), Pectinesterase (AXX17_At2g33420), Pectinesterase (AXX17_At5g45990), Pectinesterase (AXX17_At5g20800), Uncharacterized protein (AXX17_At5g27870), Pectinesterase (AXX17_At5g50310), Pectinesterase (AXX17_At5g50300), Pectinesterase (PME44), Uncharacterized protein (AXX17_At5g09310), PME26 (AXX17_At3g14890), Pectinesterase (AXX17_At5g04430), Pectinesterase (AXX17_At4g00230), Pectinesterase (PMEPCRA), Plant invertase/pectin methylesterase inhibitor superfamily (At5g09760), Pectinesterase (AXX17_At1g04730), Pectinesterase (AXX17_At1g11900), Pectinesterase (AXX17_At4g38040), Pectinesterase (AXX17_At5g04420), Pectinesterase (AXX17_At3g31890), Pectinesterase (AXX17_At4g02940), Pectinesterase (At5g26810), Pectinesterase (AXX17_At2g45340), Pectinesterase (AXX17_At1g11890), Pectinesterase (AXX17_At2g40510), Pectinesterase (At5g20860), Uncharacterized protein (AXX17_At5g64270), Pectinesterase (AXX17_At1g24390), Pectinesterase (AXX17_At4g38050), Pectinesterase (AXX17_At3g56460), Pectinesterase (AXX17_At3g05190), Pectinesterase (AXX17_At2g44780), Pectinesterase (AXX17_At3g06710), Pectinesterase (At3g14310), Pectinesterase (AXX17_At1g48300), Pectinesterase (AXX17_At3g30550), Pectinesterase (At3g49220), Pectinesterase (At4g15980), Pectinesterase (AXX17_At2g22270), Pectinesterase (AXX17_At4g18720), Pectinesterase (AXX17_At3g55110), Pectinesterase (AXX17_At4g02930), Pectinesterase (AXX17_At3g10570), Probable pectinesterase/pectinesterase inhibitor 64 (PME64), Probable pectinesterase/pectinesterase inhibitor 44 (PME44), Probable pectinesterase 49 (PME49), Probable pectinesterase/pectinesterase inhibitor 61 (PME61), Probable pectinesterase/pectinesterase inhibitor 39 (PME39), Probable pectinesterase/pectinesterase inhibitor 51 (PME51), Putative pectinesterase 52 (PME52), Pectinesterase QRT1 (QRT1), Probable pectinesterase/pectinesterase inhibitor 23 (PME23), Probable pectinesterase 8 (PME8), Probable pectinesterase/pectinesterase inhibitor 32 (PME32), Pectinesterase/pectinesterase inhibitor 3 (PME3), Probable pectinesterase/pectinesterase inhibitor 60 (PME60), Probable pectinesterase 66 (PME66), Probable pectinesterase/pectinesterase inhibitor 6 (PME6), Probable pectinesterase 29 (PME29), Probable pectinesterase/pectinesterase inhibitor 33 (PME33), Probable pectinesterase/pectinesterase inhibitor 35 (PME35), Probable pectinesterase/pectinesterase inhibitor VGDH2 (VGDH2), Putative pectinesterase/pectinesterase inhibitor 22 (PME22), Probable pectinesterase/pectinesterase inhibitor 7 (PME7), Putative pectinesterase/pectinesterase inhibitor 45 (PME45), Pectinesterase 4 (PME4), Pectinesterase/pectinesterase inhibitor 18 (PME18), Probable pectinesterase 30 (PME30), Probable pectinesterase/pectinesterase inhibitor 40 (PME40), Probable pectinesterase/pectinesterase inhibitor 41 (PME41), Putative pectinesterase/pectinesterase inhibitor 43 (PME43), Probable pectinesterase 48 (PME48), Probable pectinesterase 53 (PME53), Probable pectinesterase 56 (PME56), Putative pectinesterase 57 (PME57), Pectinesterase 5 (PME5), Putative pectinesterase/pectinesterase inhibitor 24 (PME24), Putative pectinesterase/pectinesterase inhibitor 26 (PME26), Probable pectinesterase/pectinesterase inhibitor 36 (PME36), Probable pectinesterase/pectinesterase inhibitor 42 (PME42), Probable pectinesterase 50 (PME50), Probable pectinesterase/pectinesterase inhibitor 20 (PME20), Probable pectinesterase/pectinesterase inhibitor 34 (PME34), Probable pectinesterase/pectinesterase inhibitor 46 (PME46), Probable pectinesterase/pectinesterase inhibitor 47 (PME47), Putative pectinesterase 11 (PME11), Probable pectinesterase/pectinesterase inhibitor 54 (PME54), Probable pectinesterase/pectinesterase inhibitor 21 (PME21), Putative pectinesterase 63 (PME63), Probable pectinesterase 68 (PME68), Probable pectinesterase/pectinesterase inhibitor 25 (PME25), Pectinesterase 1 (PME1), Probable pectinesterase 67 (PME67), Pectinesterase 2 (PME2), Putative pectinesterase/pectinesterase inhibitor 38 (PME38), Putative pectinesterase 14 (PME14), Probable pectinesterase/pectinesterase inhibitor 16 (PME16), Probable pectinesterase/pectinesterase inhibitor 59 (PME59), Putative pectinesterase 10 (PME10), Probable pectinesterase/pectinesterase inhibitor 12 (PME12), Probable pectinesterase 55 (PME55), Probable pectinesterase/pectinesterase inhibitor 19 (PME19), Probable pectinesterase/pectinesterase inhibitor 58 (PME58), Putative pectinesterase/pectinesterase inhibitor 28 (PME28), Pectinesterase PPME1 (PPME1), Probable pectinesterase/pectinesterase inhibitor 13 (PME13), Probable pectinesterase 15 (PME15), Probable pectinesterase/pectinesterase inhibitor 17 (PME17), Pectinesterase 31 (PME31)
  2. Pectate lyase (AXX17_At5g54880), Pectate lyase (At3g07010), Pectate lyase, Pectate lyase (At5g04310), Pectate lyase (At1g14420), Pectate lyase (At3g55140), Pectate lyase (F11F8_12), Pectate lyase (At5g09280), Pectate lyase (At3g01270), Pectate lyase (AXX17_At3g47590), Pectate lyase (AXX17_At1g04020), Pectate lyase (AXX17_At5g62760), Pectate lyase (AXX17_At4g14900), Pectate lyase (AXX17_At1g61710), Pectate lyase, Pectate lyase (AXX17_At2g01680), Pectate lyase (At3g01270), Pectate lyase (At3g07010), Pectate lyase (AXX17_At3g29900), Pectate lyase (At4g13210), Pectate lyase (AXX17_At5g08800), Pectate lyase (AXX17_At4g28670), Pectate lyase (At3g09540), Pectate lyase (At5g04310), Pectate lyase (AXX17_At5g03700), Pectate lyase (AXX17_At4g25610), Pectate lyase (AXX17_At3g26200), Pectate lyase (AXX17_At3g49720), Pectate lyase (AXX17_At3g00310), Pectate lyase (AXX17_At3g06910), Pectate lyase (At3g27400), Pectate lyase, Pectate lyase (AXX17_At5g47570), Pectate lyase, Pectate lyase (AXX17_At4g25600), Pectate lyase (AXX17_At4g15660), Pectate lyase (At3g07010), Pectate lyase (At3g53190), Pectate lyase (AXX17_At3g49450), Pectate lyase (AXX17_At1g30780), Pectate lyase, Pectate lyase (AXX17_At1g15010), Pectate lyase (At3g55140), Pectate lyase (AXX17_At5g14600), Pectate lyase (AXX17_At3g09180), Pectate lyase (T26I12.20), Pectate lyase (At4g13710), Pectate lyase (AXX17_At3g26720), Pectate lyase (AXX17_At1g12300), Probable pectate lyase 1 (At1g04680), Probable pectate lyase 10 (At3g24670), Probable pectate lyase 5 (At1g67750), Putative pectate lyase 14 (At4g13210), Probable pectate lyase 16 (At4g22080), Probable pectate lyase 22 (At5g63180), Probable pectate lyase 4 (At1g30350), Probable pectate lyase 9 (At3g24230), Probable pectate lyase 13 (PMR6), Probable pectate lyase 18 (At4g24780), Probable pectate lyase 19 (At5g15110), Probable pectate lyase 15 (At4g13710), Putative pectate lyase 2 (At1g11920), Probable pectate lyase 6 (At2g02720), Probable pectate lyase 12 (At3g53190), Probable pectate lyase 3 (AT59), Probable pectate lyase 8 (At3g07010), Probable pectate lyase 20 (At5g48900), Probable pectate lyase 7 (At3g01270), Putative pectate lyase 21 (At5g55720), Putative pectate lyase 11 (At3g27400), Putative pectate lyase 17 (At4g22090)
  3. no protein annotated in this organism
  4. no protein annotated in this organism
  5. no protein annotated in this organism
This subpathway is part of the pathway pectin degradation, which is itself part of Glycan metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin, the pathway pectin degradation and in Glycan metabolism.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the ‘Description’ field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi210CalciumBy similarity1
Metal bindingi234CalciumBy similarity1
Metal bindingi238CalciumBy similarity1
<p>This subsection of the ‘Function’ section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei290Sequence analysis1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

  • pectin catabolic process Source: UniProtKB-UniPathway
  • response to nematode Source: TAIR

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionLyase
LigandCalcium, Metal-binding

Enzyme and pathway databases

UniPathway: a resource for the exploration and annotation of metabolic pathways

More...
UniPathwayi
UPA00545;UER00824

Protein family/group databases

Carbohydrate-Active enZymes

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CAZyi
PL1 Polysaccharide Lyase Family 1

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Putative pectate lyase 11 (EC:4.2.2.2)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At3g27400
ORF Names:K1G2.11
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 3

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT3G27400

The Arabidopsis Information Resource

More...
TAIRi
locus:2086656 AT3G27400

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 24Sequence analysisAdd BLAST24
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000002487525 – 412Putative pectate lyase 11Add BLAST388

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9LTZ0

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

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ExpressionAtlasi
Q9LTZ0 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

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Genevisiblei
Q9LTZ0 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT3G27400.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
Q9LTZ0

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9LTZ0

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the polysaccharide lyase 1 family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
ENOG410JXFA Eukaryota
COG3866 LUCA

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
Q9LTZ0

KEGG Orthology (KO)

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KOi
K01728

Identification of Orthologs from Complete Genome Data

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OMAi
FGGKHIW

Database of Orthologous Groups

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OrthoDBi
EOG09360BE5

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

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Gene3Di
2.160.20.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR018082 AmbAllergen
IPR002022 Pec_lyase
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00544 Pec_lyase_C, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00807 AMBALLERGEN

Simple Modular Architecture Research Tool; a protein domain database

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SMARTi
View protein in SMART
SM00656 Amb_all, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF51126 SSF51126, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q9LTZ0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVSYSNNHFA YAFLLLLTIG NTLAFSSSLP DHVQDPNLVV DDVNRSVFNA
60 70 80 90 100
SRRSLAYLSC RTGNPIDDCW RCDPNWETNR QRLADCAIGF GKNAIGGRKG
110 120 130 140 150
RIYVVTDPAN DDPVNPRPGT LRYAVTQEEP LWIIFKRDMV IRLKKELIIT
160 170 180 190 200
SFKTIDGRGS SVHITDGPCL KIHYATNIII HGINIHDCKP GSGGMIKDGP
210 220 230 240 250
HHTGWWMQSD GDAVAIFGGK HVWIDHCSLS NCDDGLIDAI HGSTAITISN
260 270 280 290 300
NHMTHHDKVM LLGHSDSYTQ DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH
310 320 330 340 350
VVNNDYTHWE MYAIGGSASP TIYSQGNRFL APNTRFNKEV TKHEDAPESK
360 370 380 390 400
WRDWNWRSEG DMLLNGAYFR ESGAEAPSTY ARASSLSARP SSLVGSITTT
410
AGTLSCRRGR RC
Length:412
Mass (Da):45,985
Last modified:February 22, 2012 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4DBECAAFD83D2FB8
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1I9LNU6A0A1I9LNU6_ARATH
Pectate lyase
At3g27400
416Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAA95715 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AB024028 Genomic DNA Translation: BAA95715.1 Sequence problems.
CP002686 Genomic DNA Translation: AEE77312.1

NCBI Reference Sequences

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RefSeqi
NP_189376.1, NM_113655.2

UniGene gene-oriented nucleotide sequence clusters

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UniGenei
At.23327

Genome annotation databases

Ensembl plant genome annotation project

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EnsemblPlantsi
AT3G27400.1; AT3G27400.1; AT3G27400

Database of genes from NCBI RefSeq genomes

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GeneIDi
822361

Gramene; a comparative resource for plants

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Gramenei
AT3G27400.1; AT3G27400.1; AT3G27400

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
ath:AT3G27400

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB024028 Genomic DNA Translation: BAA95715.1 Sequence problems.
CP002686 Genomic DNA Translation: AEE77312.1
RefSeqiNP_189376.1, NM_113655.2
UniGeneiAt.23327

3D structure databases

ProteinModelPortaliQ9LTZ0
SMRiQ9LTZ0
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G27400.1

Protein family/group databases

CAZyiPL1 Polysaccharide Lyase Family 1

Proteomic databases

PaxDbiQ9LTZ0

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G27400.1; AT3G27400.1; AT3G27400
GeneIDi822361
GrameneiAT3G27400.1; AT3G27400.1; AT3G27400
KEGGiath:AT3G27400

Organism-specific databases

AraportiAT3G27400
TAIRilocus:2086656 AT3G27400

Phylogenomic databases

eggNOGiENOG410JXFA Eukaryota
COG3866 LUCA
InParanoidiQ9LTZ0
KOiK01728
OMAiFGGKHIW
OrthoDBiEOG09360BE5

Enzyme and pathway databases

UniPathwayi
UPA00545;UER00824

Miscellaneous databases

Protein Ontology

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PROi
PR:Q9LTZ0

Gene expression databases

ExpressionAtlasiQ9LTZ0 baseline and differential
GenevisibleiQ9LTZ0 AT

Family and domain databases

Gene3Di2.160.20.10, 1 hit
InterProiView protein in InterPro
IPR018082 AmbAllergen
IPR002022 Pec_lyase
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence
PfamiView protein in Pfam
PF00544 Pec_lyase_C, 1 hit
PRINTSiPR00807 AMBALLERGEN
SMARTiView protein in SMART
SM00656 Amb_all, 1 hit
SUPFAMiSSF51126 SSF51126, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPLY11_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9LTZ0
Secondary accession number(s): F4IWH8
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 16, 2003
Last sequence update: February 22, 2012
Last modified: December 5, 2018
This is version 106 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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