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Protein

Transcription factor MYB10

Gene

MYB10

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Involved in metal ions homeostasis, including iron ions (Fe) acquisition, via the regulation of NAS4 and NAS2 genes expression. Necessary for plant survival in alkaline soil where iron availability is greatly restricted. Triggers tolerance to nickel (Ni) and zinc (Zn) ions.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi39 – 63H-T-H motifPROSITE-ProRule annotationAdd BLAST25
DNA bindingi91 – 114H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor MYB101 Publication
Alternative name(s):
Myb-related protein 101 Publication
Short name:
AtMYB101 Publication
Gene namesi
Name:MYB10Imported
Ordered Locus Names:At3g12820Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G12820
TAIRilocus:2087690 AT3G12820

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Disruption phenotypei

Plants lacking myb10 and myb72 fail to induce transcript accumulation of the nicotianamine synthase genes NAS4 and NAS2 in iron ions (Fe) deficiency, and exhibits nickel (Ni) and zinc (Zn) sensitivity.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004423481 – 239Transcription factor MYB10Add BLAST239

Proteomic databases

PaxDbiQ9LTV4

Expressioni

Tissue specificityi

Expressed in cauline leaves and siliques.1 Publication

Inductioni

Accumulates strongly in the root stele and in the outer layers of the lateral roots when exposed to iron (Fe)-deficient conditions (PubMed:24278034). Slightly induced by ethylene and by darkness conditions (PubMed:9839469). Accumulates upon potassium (K) depletion (PubMed:15489280). Induced by zinc (Zn) and cadmium (Cd) ions (PubMed:18088336).4 Publications

Gene expression databases

ExpressionAtlasiQ9LTV4 baseline and differential

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi3702.AT3G12820.1

Structurei

3D structure databases

ProteinModelPortaliQ9LTV4
SMRiQ9LTV4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 63HTH myb-type 1PROSITE-ProRule annotationAdd BLAST53
Domaini64 – 118HTH myb-type 2PROSITE-ProRule annotationAdd BLAST55

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi122 – 147Ser-richPROSITE-ProRule annotationAdd BLAST26

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
HOGENOMiHOG000237600
InParanoidiQ9LTV4
KOiK09422
OMAiILVEQMA
OrthoDBiEOG09360MNV
PhylomeDBiQ9LTV4

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q9LTV4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGNRRAPCCD KSQVKRGPWS DEESERLRSF ILKNGHQNWR SLPKLAGLMR
60 70 80 90 100
CGKSCRLRWI NYLRPGLKRG NFTKEEEDTI IHLHQAYGNK WSKIASNFPG
110 120 130 140 150
RTDNEIKNVW NTHLKKRLVK RSISSSSSDV TNHSVSSTSS SSSSISSVLQ
160 170 180 190 200
DVIIKSERPN QEEEFGEILV EQMACGFEVD APQSLECLFD DSQVPPPISK
210 220 230
PDSLQTHGKS SDHEFWSRLI EPGFDDYNEW LIFLDNQTC
Length:239
Mass (Da):27,317
Last modified:October 1, 2000 - v1
Checksum:i014B4A1435C32D3B
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A178VK46A0A178VK46_ARATH
MYB10
MYB10 AtMYB10, myb domain protein 10, At3g12820, AXX17_At3g12870
191Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY519586 mRNA Translation: AAS10056.1
AB024033 Genomic DNA Translation: BAB02426.1
CP002686 Genomic DNA Translation: AEE75249.1
AF062862 mRNA Translation: AAC83584.1
PIRiT51634
RefSeqiNP_187888.1, NM_112118.3
UniGeneiAt.5681

Genome annotation databases

EnsemblPlantsiAT3G12820.1; AT3G12820.1; AT3G12820
GeneIDi820464
GrameneiAT3G12820.1; AT3G12820.1; AT3G12820
KEGGiath:AT3G12820

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY519586 mRNA Translation: AAS10056.1
AB024033 Genomic DNA Translation: BAB02426.1
CP002686 Genomic DNA Translation: AEE75249.1
AF062862 mRNA Translation: AAC83584.1
PIRiT51634
RefSeqiNP_187888.1, NM_112118.3
UniGeneiAt.5681

3D structure databases

ProteinModelPortaliQ9LTV4
SMRiQ9LTV4
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G12820.1

Proteomic databases

PaxDbiQ9LTV4

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G12820.1; AT3G12820.1; AT3G12820
GeneIDi820464
GrameneiAT3G12820.1; AT3G12820.1; AT3G12820
KEGGiath:AT3G12820

Organism-specific databases

AraportiAT3G12820
TAIRilocus:2087690 AT3G12820

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
HOGENOMiHOG000237600
InParanoidiQ9LTV4
KOiK09422
OMAiILVEQMA
OrthoDBiEOG09360MNV
PhylomeDBiQ9LTV4

Miscellaneous databases

PROiPR:Q9LTV4

Gene expression databases

ExpressionAtlasiQ9LTV4 baseline and differential

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiMYB10_ARATH
AccessioniPrimary (citable) accession number: Q9LTV4
Secondary accession number(s): Q9ZTF3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 22, 2017
Last sequence update: October 1, 2000
Last modified: October 10, 2018
This is version 142 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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