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Entry version 97 (16 Oct 2019)
Sequence version 1 (01 Oct 2000)
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Protein

Protein ecdysoneless homolog

Gene

At5g65490

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein ecdysoneless homologBy similarity
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At5g65490
ORF Names:K19O4.2
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

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Araporti
AT5G65490

The Arabidopsis Information Resource

More...
TAIRi
locus:2154651 AT5G65490

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002208471 – 643Protein ecdysoneless homologAdd BLAST643

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

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PaxDbi
Q9LSM5

PRoteomics IDEntifications database

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PRIDEi
Q9LSM5

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q9LSM5

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

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ExpressionAtlasi
Q9LSM5 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9LSM5 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

WithEntry#Exp.IntActNotes
HSP90-2Q0Q0I77EBI-8417545,EBI-8081141From Triticum aestivum.

Protein-protein interaction databases

Protein interaction database and analysis system

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IntActi
Q9LSM5, 2 interactors

Molecular INTeraction database

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MINTi
Q9LSM5

STRING: functional protein association networks

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STRINGi
3702.AT5G65490.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q9LSM5

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the ECD family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
KOG2406 Eukaryota
ENOG410XR07 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000029899

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
Q9LSM5

Identification of Orthologs from Complete Genome Data

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OMAi
LWHKDEF

Database of Orthologous Groups

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OrthoDBi
603336at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9LSM5

Family and domain databases

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR010770 Ecd

The PANTHER Classification System

More...
PANTHERi
PTHR13060 PTHR13060, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF07093 SGT1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9LSM5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSKPSSSPFF SETTSRLQDE TVFFSLFPDS SLSSAALQSL HLEIIDFVSP
60 70 80 90 100
FTSPYIWQHE PFSLSIALSS SCACTNTAIP HLHGKLKYGD NLEDEWFAVF
110 120 130 140 150
LLFRISAAFP SNSIRVWDTD GEFLLIEAAF HLPRWLNPET SLNRVFIRGG
160 170 180 190 200
DLHIVPRSRL PDPSLVASLR FLIERGNESR ASDSVQSALK NRISDYPERA
210 220 230 240 250
WRNMHRVRVR VPVSVAQVIR HEPFLISLAV EGFYDRDMDS MKHAAKMEKF
260 270 280 290 300
LSKGREEKLV LVLVKMSRAM YGQLVQQKFQ APNCYPMPSV SDRDAFSEAE
310 320 330 340 350
LGMKIACGME MMYQQRKKEG EDGKGISWSK YKDNLEKYGY FEGLLSGSKE
360 370 380 390 400
YKRLMENAEE YHQKSSSFSR TRDIMSAPVR RIDEILALPY SEDDFKGQEV
410 420 430 440 450
PASDNDSWLY DGEDELNSVL QERQKEMEFY NSKKERKNKG KEKQEAGSSS
460 470 480 490 500
DANMNNFDLG DISKSMQQFM HKVSSYKGAE VPENRDFKEV SIDVDRFMKD
510 520 530 540 550
IESMLGSQGR DEQADDDSDG SEGSSMDMDF DDVEDDSEGE ESNEDAKESF
560 570 580 590 600
EESYYGAMNE ELKNSTLEKS FENVNQQHSS KQNEESSKTR DEKDDEFTPV
610 620 630 640
DADFNLVKNL LESYSSQQGL PGPASNLLGL MGLQLPKDSG DKN
Length:643
Mass (Da):73,161
Last modified:October 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i9F9DD990F65B4C4F
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAL87313 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AB026638 Genomic DNA Translation: BAA98169.1
CP002688 Genomic DNA Translation: AED98062.1
AY080838 mRNA Translation: AAL87313.1 Different initiation.

NCBI Reference Sequences

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RefSeqi
NP_201352.1, NM_125947.3

Genome annotation databases

Ensembl plant genome annotation project

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EnsemblPlantsi
AT5G65490.1; AT5G65490.1; AT5G65490

Database of genes from NCBI RefSeq genomes

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GeneIDi
836674

Gramene; a comparative resource for plants

More...
Gramenei
AT5G65490.1; AT5G65490.1; AT5G65490

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT5G65490

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB026638 Genomic DNA Translation: BAA98169.1
CP002688 Genomic DNA Translation: AED98062.1
AY080838 mRNA Translation: AAL87313.1 Different initiation.
RefSeqiNP_201352.1, NM_125947.3

3D structure databases

SMRiQ9LSM5
ModBaseiSearch...

Protein-protein interaction databases

IntActiQ9LSM5, 2 interactors
MINTiQ9LSM5
STRINGi3702.AT5G65490.1

PTM databases

iPTMnetiQ9LSM5

Proteomic databases

PaxDbiQ9LSM5
PRIDEiQ9LSM5

Genome annotation databases

EnsemblPlantsiAT5G65490.1; AT5G65490.1; AT5G65490
GeneIDi836674
GrameneiAT5G65490.1; AT5G65490.1; AT5G65490
KEGGiath:AT5G65490

Organism-specific databases

AraportiAT5G65490
TAIRilocus:2154651 AT5G65490

Phylogenomic databases

eggNOGiKOG2406 Eukaryota
ENOG410XR07 LUCA
HOGENOMiHOG000029899
InParanoidiQ9LSM5
OMAiLWHKDEF
OrthoDBi603336at2759
PhylomeDBiQ9LSM5

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9LSM5

Gene expression databases

ExpressionAtlasiQ9LSM5 baseline and differential
GenevisibleiQ9LSM5 AT

Family and domain databases

InterProiView protein in InterPro
IPR010770 Ecd
PANTHERiPTHR13060 PTHR13060, 1 hit
PfamiView protein in Pfam
PF07093 SGT1, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiECD_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9LSM5
Secondary accession number(s): Q8RXK5
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 16, 2001
Last sequence update: October 1, 2000
Last modified: October 16, 2019
This is version 97 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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