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Entry version 102 (12 Aug 2020)
Sequence version 1 (01 Oct 2000)
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Protein

Receptor-like protein 40

Gene

RLP40

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionReceptor

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Receptor-like protein 401 Publication
Short name:
AtRLP401 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RLP401 Publication
Ordered Locus Names:At3g24982Imported
ORF Names:K7P8.21Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 3

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT3G24982

The Arabidopsis Information Resource

More...
TAIRi
locus:2829370, AT3G24982

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini22 – 846ExtracellularSequence analysisAdd BLAST825
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei847 – 867HelicalSequence analysisAdd BLAST21
Topological domaini868 – 883CytoplasmicSequence analysisAdd BLAST16

Keywords - Cellular componenti

Cell membrane, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 21Sequence analysisAdd BLAST21
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500432926122 – 883Receptor-like protein 40Add BLAST862

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi58N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi91N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi109N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi145N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi189N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi207N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi243N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi266N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi305N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi312N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi352N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi462N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi506N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi519N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi575N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi731N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi779N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9LRW9

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
227990

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9LRW9, baseline and differential

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati97 – 121LRR 1Sequence analysisAdd BLAST25
Repeati122 – 143LRR 2Sequence analysisAdd BLAST22
Repeati146 – 169LRR 3Sequence analysisAdd BLAST24
Repeati170 – 195LRR 4Sequence analysisAdd BLAST26
Repeati197 – 219LRR 5Sequence analysisAdd BLAST23
Repeati220 – 244LRR 6Sequence analysisAdd BLAST25
Repeati246 – 267LRR 7Sequence analysisAdd BLAST22
Repeati268 – 291LRR 8Sequence analysisAdd BLAST24
Repeati293 – 316LRR 9Sequence analysisAdd BLAST24
Repeati317 – 340LRR 10Sequence analysisAdd BLAST24
Repeati342 – 364LRR 11Sequence analysisAdd BLAST23
Repeati365 – 390LRR 12Sequence analysisAdd BLAST26
Repeati391 – 412LRR 13Sequence analysisAdd BLAST22
Repeati413 – 437LRR 14Sequence analysisAdd BLAST25
Repeati439 – 462LRR 15Sequence analysisAdd BLAST24
Repeati463 – 486LRR 16Sequence analysisAdd BLAST24
Repeati487 – 506LRR 17; degenerateCuratedAdd BLAST20
Repeati507 – 528LRR 18Sequence analysisAdd BLAST22
Repeati529 – 552LRR 19Sequence analysisAdd BLAST24
Repeati554 – 576LRR 20Sequence analysisAdd BLAST23
Repeati578 – 600LRR 21Sequence analysisAdd BLAST23
Repeati601 – 624LRR 22Sequence analysisAdd BLAST24
Repeati627 – 651LRR 23Sequence analysisAdd BLAST25
Repeati701 – 724LRR 24Sequence analysisAdd BLAST24
Repeati725 – 747LRR 25Sequence analysisAdd BLAST23
Repeati748 – 772LRR 26Sequence analysisAdd BLAST25
Repeati774 – 797LRR 27Sequence analysisAdd BLAST24

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the RLP family.Curated

Keywords - Domaini

Leucine-rich repeat, Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0619, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_000288_18_3_1

Database of Orthologous Groups

More...
OrthoDBi
303561at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9LRW9

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.80.10.10, 3 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR001611, Leu-rich_rpt
IPR003591, Leu-rich_rpt_typical-subtyp
IPR032675, LRR_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00560, LRR_1, 3 hits
PF13855, LRR_8, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00369, LRR_TYP, 8 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LRW9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSELLFSLNF LLLLLLSCVS PSSFFTFNNP VVGLGACGPH QIQAFTQFKN
60 70 80 90 100
EFDTRACNHS DPWNGVWCDD STGAVTMLQL RACLSGTLKP NSSLFQFHHL
110 120 130 140 150
RSLLLPHNNF TSSSISSKFG MLNNLEVLSL SSSGFLAQVP FSFSNLSMLS
160 170 180 190 200
ALVLSNNDLT GSLSFARNLR KLRVLDVSYN HFSGILNPNS SLFELHHIIY
210 220 230 240 250
LNLRYNNFTS SSLPYEFGNL NKLEVLDVSS NSFFGQVPPT ISNLTQLTEL
260 270 280 290 300
YLPLNHFTGS LPLVQNLTKL SILHLFGNHF SGTIPSSLFT MPFLSYLSLK
310 320 330 340 350
GNNLNGSIEV PNSSSSSRLE SLHLGENHFE GKILEPISKL INLKELDLSF
360 370 380 390 400
LNTSYPIDLS LFSSLKSLLL LDLSGDWISK ASLTLDSYIP STLEVLRLEH
410 420 430 440 450
CDISDFPNVF KTLHNLEYIA LSNNRISGKF PEWLWSLPRL SSVFITDNLL
460 470 480 490 500
TGFEGSSEVL VNSSVQILSL DTNSLEGALP HLPLSINYFS AIDNRFGGDI
510 520 530 540 550
PLSICNRSSL DVLDLSYNNF TGPIPPCLSN LLYLKLRKNN LEGSIPDKYY
560 570 580 590 600
EDTPLRSLDV GYNRLTGKLP RSLINCSALQ FLSVDHNGIK DTFPFSLKAL
610 620 630 640 650
PKLQVLLLSS NKFYGPLSPP NEGPLGFPEL RILEIAGNKL TGSLSSDFFV
660 670 680 690 700
NWKASSHTMN EDLGLYMVYG KVIFGNYHLT YYETIDLRYK GLSMEQRNVL
710 720 730 740 750
TSSATIDFSG NRLEGEIPES IGLLKALIAL NLSNNAFTGH IPLSFANLKK
760 770 780 790 800
MESLDLSSNQ LSGTIPNGLR TLSFLAYVNV SHNQLIGEIP QGTQITGQPK
810 820 830 840 850
SSFEGNAGLC GFPLQESCFG TNTPPAQHPK EQEEEEEDEQ VLNWKAVAIG
860 870 880
YGIGVLLGLA IAQLISLYKP KWLASLVIKS RNC
Length:883
Mass (Da):97,590
Last modified:October 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i8202A333AF193937
GO

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAR24718 differs from that shown. Reason: Erroneous initiation. Truncated N-terminus.Curated
The sequence AEE76963 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AB028609, AP000412 Genomic DNA Translation: BAB02902.1
CP002686 Genomic DNA Translation: AEE76963.1 Sequence problems.
BT010940 mRNA Translation: AAR24718.1 Different initiation.
BT011648 mRNA Translation: AAS47654.1

NCBI Reference Sequences

More...
RefSeqi
NP_566757.2, NM_113404.3

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
822091

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT3G24982

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB028609, AP000412 Genomic DNA Translation: BAB02902.1
CP002686 Genomic DNA Translation: AEE76963.1 Sequence problems.
BT010940 mRNA Translation: AAR24718.1 Different initiation.
BT011648 mRNA Translation: AAS47654.1
RefSeqiNP_566757.2, NM_113404.3

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Proteomic databases

PaxDbiQ9LRW9
ProteomicsDBi227990

Genome annotation databases

GeneIDi822091
KEGGiath:AT3G24982

Organism-specific databases

AraportiAT3G24982
TAIRilocus:2829370, AT3G24982

Phylogenomic databases

eggNOGiKOG0619, Eukaryota
HOGENOMiCLU_000288_18_3_1
OrthoDBi303561at2759
PhylomeDBiQ9LRW9

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9LRW9

Gene expression databases

ExpressionAtlasiQ9LRW9, baseline and differential

Family and domain databases

Gene3Di3.80.10.10, 3 hits
InterProiView protein in InterPro
IPR001611, Leu-rich_rpt
IPR003591, Leu-rich_rpt_typical-subtyp
IPR032675, LRR_dom_sf
PfamiView protein in Pfam
PF00560, LRR_1, 3 hits
PF13855, LRR_8, 2 hits
SMARTiView protein in SMART
SM00369, LRR_TYP, 8 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRLP40_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9LRW9
Secondary accession number(s): F4J7T9, Q6NMK9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 25, 2018
Last sequence update: October 1, 2000
Last modified: August 12, 2020
This is version 102 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
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