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Protein

60S ribosomal protein L27a-2

Gene

RPL27AB

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: GO_Central
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • cytoplasmic translation Source: GO_Central
  • flower development Source: TAIR
  • inflorescence development Source: TAIR
  • post-embryonic development Source: TAIR

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L27a-2
Gene namesi
Name:RPL27AB
Ordered Locus Names:At1g23290
ORF Names:F26F24.13, F26F24_23
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G23290
TAIRilocus:2028080 AT1G23290

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001048971 – 14660S ribosomal protein L27a-2Add BLAST146

Proteomic databases

PaxDbiQ9LR33
PRIDEiQ9LR33

Expressioni

Gene expression databases

ExpressionAtlasiQ9LR33 differential
GenevisibleiQ9LR33 AT

Interactioni

Protein-protein interaction databases

BioGridi24177, 3 interactors
IntActiQ9LR33, 1 interactor
STRINGi3702.AT1G23290.1

Structurei

3D structure databases

ProteinModelPortaliQ9LR33
SMRiQ9LR33
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1742 Eukaryota
COG0200 LUCA
HOGENOMiHOG000231263
InParanoidiQ9LR33
KOiK02900
OMAiRIGKHQK
OrthoDBiEOG09360RWL
PhylomeDBiQ9LR33

Family and domain databases

HAMAPiMF_01341 Ribosomal_L15, 1 hit
InterProiView protein in InterPro
IPR036227 L18e/L15P_sf
IPR030878 Ribosomal_L15
IPR001196 Ribosomal_L15_CS
IPR021131 Ribosomal_L18e/L15P
PfamiView protein in Pfam
PF00828 Ribosomal_L27A, 1 hit
SUPFAMiSSF52080 SSF52080, 1 hit
PROSITEiView protein in PROSITE
PS00475 RIBOSOMAL_L15, 1 hit

Sequencei

Sequence statusi: Complete.

Q9LR33-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP
60 70 80 90 100
GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS SKDNVPLIDV
110 120 130 140
TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
Length:146
Mass (Da):16,292
Last modified:October 1, 2000 - v1
Checksum:i0CA6C019D8B1A565
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti3 – 4TA → DG in CAA81190 (PubMed:8580968).Curated2
Sequence conflicti31G → V in CAA81190 (PubMed:8580968).Curated1
Sequence conflicti139G → C (PubMed:8580968).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005292 Genomic DNA Translation: AAF86998.1
CP002684 Genomic DNA Translation: AEE30368.1
AF324716 mRNA Translation: AAG40067.1
AF349525 mRNA Translation: AAK15572.1
AF410280 mRNA Translation: AAK95266.1
BT000542 mRNA Translation: AAN18111.1
Z26208 mRNA Translation: CAA81190.1
RefSeqiNP_173743.1, NM_102178.3
UniGeneiAt.20789

Genome annotation databases

EnsemblPlantsiAT1G23290.1; AT1G23290.1; AT1G23290
GeneIDi838938
GrameneiAT1G23290.1; AT1G23290.1; AT1G23290
KEGGiath:AT1G23290

Similar proteinsi

Entry informationi

Entry nameiR27A2_ARATH
AccessioniPrimary (citable) accession number: Q9LR33
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 23, 2002
Last sequence update: October 1, 2000
Last modified: May 23, 2018
This is version 113 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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