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Entry version 102 (16 Oct 2019)
Sequence version 2 (01 Jul 2008)
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Protein

Putative pentatricopeptide repeat-containing protein At1g19290

Gene

At1g19290

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Putative pentatricopeptide repeat-containing protein At1g19290
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At1g19290
ORF Names:F18O14.1, T29M8.14
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

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Araporti
AT1G19290

The Arabidopsis Information Resource

More...
TAIRi
locus:2016427 AT1G19290

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003427911 – 904Putative pentatricopeptide repeat-containing protein At1g19290Add BLAST904

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9LN69

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9LN69 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9LN69 AT

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q9LN69

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati154 – 188PPR 1Add BLAST35
Repeati189 – 223PPR 2Add BLAST35
Repeati224 – 254PPR 3Add BLAST31
Repeati260 – 294PPR 4Add BLAST35
Repeati295 – 329PPR 5Add BLAST35
Repeati330 – 364PPR 6Add BLAST35
Repeati365 – 399PPR 7Add BLAST35
Repeati400 – 434PPR 8Add BLAST35
Repeati435 – 469PPR 9Add BLAST35
Repeati470 – 504PPR 10Add BLAST35
Repeati505 – 539PPR 11Add BLAST35
Repeati540 – 574PPR 12Add BLAST35
Repeati575 – 609PPR 13Add BLAST35
Repeati610 – 644PPR 14Add BLAST35
Repeati645 – 679PPR 15Add BLAST35
Repeati718 – 753PPR 16Add BLAST36
Repeati754 – 788PPR 17Add BLAST35
Repeati789 – 823PPR 18Add BLAST35
Repeati824 – 858PPR 19Add BLAST35

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG4197 Eukaryota
ENOG410Z7Z7 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000083913

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9LN69

KEGG Orthology (KO)

More...
KOi
K17964

Identification of Orthologs from Complete Genome Data

More...
OMAi
DNFTYCT

Database of Orthologous Groups

More...
OrthoDBi
1344243at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9LN69

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.40.10, 9 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01535 PPR, 1 hit
PF12854 PPR_1, 2 hits
PF13041 PPR_2, 5 hits
PF13812 PPR_3, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR00756 PPR, 15 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51375 PPR, 20 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9LN69-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLRRSPARVV AYQLLPFLYT RSFSEASRTL RRELRGGNGR IRPELLERVS
60 70 80 90 100
RLLVLGRYEA LHDLSLDFSD ELLNSILRRL RLNPEACLEI FNLASKQQKF
110 120 130 140 150
RPDYKAYCKM VHILSRARNY QQTKSYLCEL VALNHSGFVV WGELVRVFKE
160 170 180 190 200
FSFSPTVFDM ILKVYAEKGL VKNALHVFDN MGNYGRIPSL LSCNSLLSNL
210 220 230 240 250
VRKGENFVAL HVYDQMISFE VSPDVFTCSI VVNAYCRSGN VDKAMVFAKE
260 270 280 290 300
TESSLGLELN VVTYNSLING YAMIGDVEGM TRVLRLMSER GVSRNVVTYT
310 320 330 340 350
SLIKGYCKKG LMEEAEHVFE LLKEKKLVAD QHMYGVLMDG YCRTGQIRDA
360 370 380 390 400
VRVHDNMIEI GVRTNTTICN SLINGYCKSG QLVEAEQIFS RMNDWSLKPD
410 420 430 440 450
HHTYNTLVDG YCRAGYVDEA LKLCDQMCQK EVVPTVMTYN ILLKGYSRIG
460 470 480 490 500
AFHDVLSLWK MMLKRGVNAD EISCSTLLEA LFKLGDFNEA MKLWENVLAR
510 520 530 540 550
GLLTDTITLN VMISGLCKME KVNEAKEILD NVNIFRCKPA VQTYQALSHG
560 570 580 590 600
YYKVGNLKEA FAVKEYMERK GIFPTIEMYN TLISGAFKYR HLNKVADLVI
610 620 630 640 650
ELRARGLTPT VATYGALITG WCNIGMIDKA YATCFEMIEK GITLNVNICS
660 670 680 690 700
KIANSLFRLD KIDEACLLLQ KIVDFDLLLP GYQSLKEFLE ASATTCLKTQ
710 720 730 740 750
KIAESVENST PKKLLVPNNI VYNVAIAGLC KAGKLEDARK LFSDLLSSDR
760 770 780 790 800
FIPDEYTYTI LIHGCAIAGD INKAFTLRDE MALKGIIPNI VTYNALIKGL
810 820 830 840 850
CKLGNVDRAQ RLLHKLPQKG ITPNAITYNT LIDGLVKSGN VAEAMRLKEK
860 870 880 890 900
MIEKGLVRGS DKQGDVDIPK EVVLDPEVKL GSTGVIEMNS NELYDVRRVS

EAVV
Length:904
Mass (Da):101,860
Last modified:July 1, 2008 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iB5004C87AD006950
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAF79419 differs from that shown. Reason: Erroneous initiation.Curated
The sequence AAF82237 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene has been split into 2 genes: At1g19270 and At1g19290.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AC025808 Genomic DNA Translation: AAF79419.1 Different initiation.
AC069143 Genomic DNA Translation: AAF82237.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE29826.1
CP002684 Genomic DNA Translation: ANM60995.1

Protein sequence database of the Protein Information Resource

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PIRi
D86326

NCBI Reference Sequences

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RefSeqi
NP_001319043.1, NM_001332390.1
NP_173362.2, NM_101786.3

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G19290.1; AT1G19290.1; AT1G19290
AT1G19290.2; AT1G19290.2; AT1G19290

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
838511

Gramene; a comparative resource for plants

More...
Gramenei
AT1G19290.1; AT1G19290.1; AT1G19290
AT1G19290.2; AT1G19290.2; AT1G19290

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G19290

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

<p>This subsection of the <a href="http://www.uniprot.org/manual/cross_references_section">Cross-references</a> section provides links to various web resources that are relevant for a specific protein.<p><a href='/help/web_resource' target='_top'>More...</a></p>Web resourcesi

Pentatricopeptide repeat proteins

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC025808 Genomic DNA Translation: AAF79419.1 Different initiation.
AC069143 Genomic DNA Translation: AAF82237.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE29826.1
CP002684 Genomic DNA Translation: ANM60995.1
PIRiD86326
RefSeqiNP_001319043.1, NM_001332390.1
NP_173362.2, NM_101786.3

3D structure databases

SMRiQ9LN69
ModBaseiSearch...

Proteomic databases

PaxDbiQ9LN69

Genome annotation databases

EnsemblPlantsiAT1G19290.1; AT1G19290.1; AT1G19290
AT1G19290.2; AT1G19290.2; AT1G19290
GeneIDi838511
GrameneiAT1G19290.1; AT1G19290.1; AT1G19290
AT1G19290.2; AT1G19290.2; AT1G19290
KEGGiath:AT1G19290

Organism-specific databases

AraportiAT1G19290
TAIRilocus:2016427 AT1G19290

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000083913
InParanoidiQ9LN69
KOiK17964
OMAiDNFTYCT
OrthoDBi1344243at2759
PhylomeDBiQ9LN69

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9LN69

Gene expression databases

ExpressionAtlasiQ9LN69 baseline and differential
GenevisibleiQ9LN69 AT

Family and domain databases

Gene3Di1.25.40.10, 9 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 1 hit
PF12854 PPR_1, 2 hits
PF13041 PPR_2, 5 hits
PF13812 PPR_3, 1 hit
TIGRFAMsiTIGR00756 PPR, 15 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 20 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPPR50_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9LN69
Secondary accession number(s): Q9LM99
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: July 1, 2008
Last modified: October 16, 2019
This is version 102 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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