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Protein

Pentatricopeptide repeat-containing protein At1g08070, chloroplastic

Gene

PCMP-H12

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Involved in multiple sites RNA editing events in chloroplasts. Involved in the editing of the site 9 of ndhB (ndhB-9) and site 1 of ndhG (ndhG-1) transcripts, which are two plastid-encoded subunits of the chloroplast NAD(P)H dehydrogenase (NDH) complex. Not essential for the activity of the NDH complex of the photosynthetic electron transport chain.1 Publication

Miscellaneous

The DYW motif is dispensable for editing activity in vivo.1 Publication

GO - Molecular functioni

GO - Biological processi

  • chloroplast RNA modification Source: GO_Central
  • chloroplast RNA processing Source: TAIR
  • mRNA processing Source: UniProtKB-KW

Keywordsi

Biological processmRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g08070, chloroplasticCurated
Alternative name(s):
Protein ORGANELLE TRANSCRIPT PROCESSING 821 Publication
Gene namesi
Name:PCMP-H12
Synonyms:OTP821 Publication
Ordered Locus Names:At1g08070
ORF Names:T6D22.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G08070
TAIRilocus:2205200 AT1G08070

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

Pathology & Biotechi

Disruption phenotypei

No visible phenotype under normal growth conditions.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_0000342762? – 741Pentatricopeptide repeat-containing protein At1g08070, chloroplastic
Transit peptidei1 – ?ChloroplastCurated

Proteomic databases

PaxDbiQ9LN01

Expressioni

Gene expression databases

ExpressionAtlasiQ9LN01 baseline and differential
GenevisibleiQ9LN01 AT

Interactioni

Subunit structurei

Interacts with ORRM1 (PubMed:23487777). Interacts with VAR3/OZ1 (PubMed:25768119).2 Publications

Protein-protein interaction databases

BioGridi22566, 1 interactor
STRINGi3702.AT1G08070.1

Structurei

3D structure databases

ProteinModelPortaliQ9LN01
SMRiQ9LN01
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati98 – 132PPR 1Add BLAST35
Repeati133 – 167PPR 2Add BLAST35
Repeati168 – 202PPR 3Add BLAST35
Repeati203 – 229PPR 4Add BLAST27
Repeati230 – 264PPR 5Add BLAST35
Repeati265 – 299PPR 6Add BLAST35
Repeati300 – 330PPR 7Add BLAST31
Repeati331 – 365PPR 8Add BLAST35
Repeati366 – 396PPR 9Add BLAST31
Repeati403 – 433PPR 10Add BLAST31
Repeati434 – 468PPR 11Add BLAST35
Repeati469 – 499PPR 12Add BLAST31
Repeati505 – 535PPR 13Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni540 – 615Type E motifAdd BLAST76
Regioni616 – 646Type E(+) motifAdd BLAST31
Regioni647 – 741Type DYW motifAdd BLAST95

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237569
InParanoidiQ9LN01
OMAiDPPYKLL
OrthoDBiEOG0936054L
PhylomeDBiQ9LN01

Family and domain databases

Gene3Di1.25.40.10, 4 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 5 hits
PF12854 PPR_1, 1 hit
PF13041 PPR_2, 3 hits
SUPFAMiSSF48452 SSF48452, 4 hits
TIGRFAMsiTIGR00756 PPR, 5 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 14 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LN01-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMLSCSPLTV PSSSYPFHFL PSSSDPPYDS IRNHPSLSLL HNCKTLQSLR
60 70 80 90 100
IIHAQMIKIG LHNTNYALSK LIEFCILSPH FEGLPYAISV FKTIQEPNLL
110 120 130 140 150
IWNTMFRGHA LSSDPVSALK LYVCMISLGL LPNSYTFPFV LKSCAKSKAF
160 170 180 190 200
KEGQQIHGHV LKLGCDLDLY VHTSLISMYV QNGRLEDAHK VFDKSPHRDV
210 220 230 240 250
VSYTALIKGY ASRGYIENAQ KLFDEIPVKD VVSWNAMISG YAETGNYKEA
260 270 280 290 300
LELFKDMMKT NVRPDESTMV TVVSACAQSG SIELGRQVHL WIDDHGFGSN
310 320 330 340 350
LKIVNALIDL YSKCGELETA CGLFERLPYK DVISWNTLIG GYTHMNLYKE
360 370 380 390 400
ALLLFQEMLR SGETPNDVTM LSILPACAHL GAIDIGRWIH VYIDKRLKGV
410 420 430 440 450
TNASSLRTSL IDMYAKCGDI EAAHQVFNSI LHKSLSSWNA MIFGFAMHGR
460 470 480 490 500
ADASFDLFSR MRKIGIQPDD ITFVGLLSAC SHSGMLDLGR HIFRTMTQDY
510 520 530 540 550
KMTPKLEHYG CMIDLLGHSG LFKEAEEMIN MMEMEPDGVI WCSLLKACKM
560 570 580 590 600
HGNVELGESF AENLIKIEPE NPGSYVLLSN IYASAGRWNE VAKTRALLND
610 620 630 640 650
KGMKKVPGCS SIEIDSVVHE FIIGDKFHPR NREIYGMLEE MEVLLEKAGF
660 670 680 690 700
VPDTSEVLQE MEEEWKEGAL RHHSEKLAIA FGLISTKPGT KLTIVKNLRV
710 720 730 740
CRNCHEATKL ISKIYKREII ARDRTRFHHF RDGVCSCNDY W
Length:741
Mass (Da):83,512
Last modified:October 1, 2000 - v1
Checksum:i66FF9A0E1E814EBA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC026875 Genomic DNA Translation: AAF79838.1
CP002684 Genomic DNA Translation: AEE28239.1
RefSeqiNP_172286.1, NM_100682.3
UniGeneiAt.43030

Genome annotation databases

EnsemblPlantsiAT1G08070.1; AT1G08070.1; AT1G08070
GeneIDi837325
GrameneiAT1G08070.1; AT1G08070.1; AT1G08070
KEGGiath:AT1G08070

Similar proteinsi

Entry informationi

Entry nameiPPR21_ARATH
AccessioniPrimary (citable) accession number: Q9LN01
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: October 1, 2000
Last modified: April 25, 2018
This is version 103 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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