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Protein

Ran-binding protein 1 homolog a

Gene

RANBP1A

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • Ran GTPase binding Source: GO_Central

GO - Biological processi

Keywordsi

Biological processmRNA transport, Protein transport, Translocation, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Ran-binding protein 1 homolog a
Alternative name(s):
Ran-binding protein siRanBP
Gene namesi
Name:RANBP1A
Synonyms:SIRANBP
Ordered Locus Names:At1g07140
ORF Names:F10K1.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G07140
TAIRilocus:2007467 AT1G07140

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nuclear pore complex, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000971871 – 228Ran-binding protein 1 homolog aAdd BLAST228

Proteomic databases

PaxDbiQ9LMK7
PRIDEiQ9LMK7

PTM databases

iPTMnetiQ9LMK7

Expressioni

Tissue specificityi

Ubiquitous. Preferentially expressed in root tips and gynoecium.1 Publication

Gene expression databases

ExpressionAtlasiQ9LMK7 baseline and differential
GenevisibleiQ9LMK7 AT

Interactioni

Subunit structurei

Interacts with the GTP-bound form of RAN1, RAN2 and RAN3.1 Publication

GO - Molecular functioni

Protein-protein interaction databases

BioGridi22466, 3 interactors
IntActiQ9LMK7, 3 interactors
STRINGi3702.AT1G07140.1

Structurei

3D structure databases

ProteinModelPortaliQ9LMK7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini27 – 162RanBD1PROSITE-ProRule annotationAdd BLAST136

Phylogenomic databases

eggNOGiKOG0864 Eukaryota
COG5171 LUCA
HOGENOMiHOG000176323
InParanoidiQ9LMK7
KOiK15306
OMAiEEADVHF
OrthoDBiEOG09360PSA
PhylomeDBiQ9LMK7

Family and domain databases

Gene3Di2.30.29.30, 1 hit
InterProiView protein in InterPro
IPR011993 PH-like_dom_sf
IPR000156 Ran_bind_dom
PfamiView protein in Pfam
PF00638 Ran_BP1, 1 hit
SMARTiView protein in SMART
SM00160 RanBD, 1 hit
PROSITEiView protein in PROSITE
PS50196 RANBD1, 1 hit

Sequencei

Sequence statusi: Complete.

Q9LMK7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MATNEPEHEH RDEEEAGANE DEDTGAQVAP IVRLEEVAVT TGEEDEDAVL
60 70 80 90 100
DLKSKLYRFD KDANQWKERG AGTVKFLKHK NTGKIRLVMR QSKTLKICAN
110 120 130 140 150
HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM
160 170 180 190 200
QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
210 220
EVKAEEKKES EAEKSGEAKK TEESGPST
Length:228
Mass (Da):25,601
Last modified:October 1, 2000 - v1
Checksum:i101E45421EF5B62F
GO

Sequence cautioni

The sequence AAD39835 differs from that shown. Reason: Frameshift at position 225.Curated
The sequence CAA66045 differs from that shown. Reason: Frameshift at position 225.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti75K → N in AAD39835 (Ref. 2) Curated1
Sequence conflicti86R → P in AAD39835 (Ref. 2) Curated1
Sequence conflicti103V → L in AAD39835 (Ref. 2) Curated1
Sequence conflicti132K → Q in AAD39835 (Ref. 2) Curated1
Sequence conflicti137C → Y in AAD39835 (Ref. 2) Curated1
Sequence conflicti194A → L in CAA66045 (PubMed:9025305).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X97377 mRNA Translation: CAA66045.1 Frameshift.
AF057024 mRNA Translation: AAD39835.1 Frameshift.
AC067971 Genomic DNA Translation: AAF82206.1
CP002684 Genomic DNA Translation: AEE28081.1
AF370491 mRNA Translation: AAK43868.1
AF410294 mRNA Translation: AAK95280.1
AY097364 mRNA Translation: AAM19880.1
BT002193 mRNA Translation: AAN72204.1
PIRiD86206
RefSeqiNP_172194.1, NM_100588.4
UniGeneiAt.22610
At.23647
At.74721

Genome annotation databases

EnsemblPlantsiAT1G07140.1; AT1G07140.1; AT1G07140
GeneIDi837225
GrameneiAT1G07140.1; AT1G07140.1; AT1G07140
KEGGiath:AT1G07140

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X97377 mRNA Translation: CAA66045.1 Frameshift.
AF057024 mRNA Translation: AAD39835.1 Frameshift.
AC067971 Genomic DNA Translation: AAF82206.1
CP002684 Genomic DNA Translation: AEE28081.1
AF370491 mRNA Translation: AAK43868.1
AF410294 mRNA Translation: AAK95280.1
AY097364 mRNA Translation: AAM19880.1
BT002193 mRNA Translation: AAN72204.1
PIRiD86206
RefSeqiNP_172194.1, NM_100588.4
UniGeneiAt.22610
At.23647
At.74721

3D structure databases

ProteinModelPortaliQ9LMK7
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi22466, 3 interactors
IntActiQ9LMK7, 3 interactors
STRINGi3702.AT1G07140.1

PTM databases

iPTMnetiQ9LMK7

Proteomic databases

PaxDbiQ9LMK7
PRIDEiQ9LMK7

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G07140.1; AT1G07140.1; AT1G07140
GeneIDi837225
GrameneiAT1G07140.1; AT1G07140.1; AT1G07140
KEGGiath:AT1G07140

Organism-specific databases

AraportiAT1G07140
TAIRilocus:2007467 AT1G07140

Phylogenomic databases

eggNOGiKOG0864 Eukaryota
COG5171 LUCA
HOGENOMiHOG000176323
InParanoidiQ9LMK7
KOiK15306
OMAiEEADVHF
OrthoDBiEOG09360PSA
PhylomeDBiQ9LMK7

Miscellaneous databases

PROiPR:Q9LMK7

Gene expression databases

ExpressionAtlasiQ9LMK7 baseline and differential
GenevisibleiQ9LMK7 AT

Family and domain databases

Gene3Di2.30.29.30, 1 hit
InterProiView protein in InterPro
IPR011993 PH-like_dom_sf
IPR000156 Ran_bind_dom
PfamiView protein in Pfam
PF00638 Ran_BP1, 1 hit
SMARTiView protein in SMART
SM00160 RanBD, 1 hit
PROSITEiView protein in PROSITE
PS50196 RANBD1, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRBP1A_ARATH
AccessioniPrimary (citable) accession number: Q9LMK7
Secondary accession number(s): O04149, Q9XHS1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 27, 2005
Last sequence update: October 1, 2000
Last modified: November 7, 2018
This is version 117 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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