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Entry version 85 (11 Dec 2019)
Sequence version 2 (01 Sep 2009)
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Protein

Putative protein FAR1-RELATED SEQUENCE 10

Gene

FRS10

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri565 – 603SWIM-typePROSITE-ProRule annotationAdd BLAST39

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Putative protein FAR1-RELATED SEQUENCE 10
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:FRS10
Ordered Locus Names:At5g28530
ORF Names:T26D3.9
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT5G28530

The Arabidopsis Information Resource

More...
TAIRi
locus:2182778 AT5G28530

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003634881 – 685Putative protein FAR1-RELATED SEQUENCE 10Add BLAST685

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9LKR4

PRoteomics IDEntifications database

More...
PRIDEi
Q9LKR4

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9LKR4 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9LKR4 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT5G28530.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9LKR4

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini69 – 161FAR1Add BLAST93
Domaini292 – 388MULEAdd BLAST97

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the FHY3/FAR1 family.Curated

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri565 – 603SWIM-typePROSITE-ProRule annotationAdd BLAST39

Keywords - Domaini

Zinc-finger

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IHRQ Eukaryota
ENOG411183B LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000006468

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9LKR4

Identification of Orthologs from Complete Genome Data

More...
OMAi
DFEHQWN

Database of Orthologous Groups

More...
OrthoDBi
207622at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9LKR4

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR004330 FAR1_DNA_bnd_dom
IPR031052 FHY3/FAR1
IPR018289 MULE_transposase_dom
IPR006564 Znf_PMZ
IPR007527 Znf_SWIM

The PANTHER Classification System

More...
PANTHERi
PTHR31669 PTHR31669, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF03101 FAR1, 1 hit
PF10551 MULE, 1 hit
PF04434 SWIM, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00575 ZnF_PMZ, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50966 ZF_SWIM, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

Q9LKR4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MALKPLNNIW IRRQQCPCGD WKCYIRLEED ESTITKSEIE STPTPTSQYD
60 70 80 90 100
TVFTPYVGQI FTTDDEAFEY YSTFARKSGF SIRKARSTES QNLGVYRRDF
110 120 130 140 150
VCYRSGFNQP RKKANVEHPR ERKSVRCGCD GKLYLTKEVV DGVSHWYVSQ
160 170 180 190 200
FSNVHNHELL EDDQVRLLPA YRKIQQSDQE RILLLSKAGF PVNRIVKLLE
210 220 230 240 250
LEKGVVSGQL PFIEKDVRNF VRACKKSVQE NDAFMTEKRE SDTLELLECC
260 270 280 290 300
KGLAERDMDF VYDCTSDENQ KVENIAWAYG DSVRGYSLFG DVVVFDTSYR
310 320 330 340 350
SVPYGLLLGV FFGIDNNGKA MLLGCVLLQD ESCRSFTWAL QTFVRFMRGR
360 370 380 390 400
HPQTILTDID TGLKDAIGRE MPNTNHVVFM SHIVSKLASW FSQTLGSHYE
410 420 430 440 450
EFRAGFDMLC RAGNVDEFEQ QWDLLVTRFG LVPDRHAALL YSCRASWLPC
460 470 480 490 500
CIREHFVAQT MTSEFNLSID SFLKRVVDGA TCMQLLLEES ALQVSAAASL
510 520 530 540 550
AKQILPRFTY PSLKTCMPME DHARGILTPY AFSVLQNEMV LSVQYAVAEM
560 570 580 590 600
ANGPFIVHHY KKMEGECCVI WNPENEEIQC SCKEFEHSGI LCRHTLRVLT
610 620 630 640 650
VKNCFHIPEQ YFLLRWRQES PHVATENQNG QGIGDDSAQT FHSLTETLLT
660 670 680
ESMISKDRLD YANQELSLLI DRVRNTAPAN CLYQP
Length:685
Mass (Da):78,525
Last modified:September 1, 2009 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i97AE88CD1A85CE37
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8BEH0A0A1P8BEH0_ARATH
FAR1-related sequence 10
FRS10 FAR1-related sequence 10, At5g28530, T26D3.9, T26D3_9
618Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8BEH3A0A1P8BEH3_ARATH
FAR1-related sequence 10
FRS10 FAR1-related sequence 10, At5g28530, T26D3.9, T26D3_9
622Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8BEG3A0A1P8BEG3_ARATH
FAR1-related sequence 10
FRS10 FAR1-related sequence 10, At5g28530, T26D3.9, T26D3_9
681Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAF88018 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF262043 Genomic DNA Translation: AAF88018.1 Sequence problems.
CP002688 Genomic DNA Translation: AED93811.1

NCBI Reference Sequences

More...
RefSeqi
NP_198205.2, NM_122736.2

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT5G28530.1; AT5G28530.1; AT5G28530

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
832948

Gramene; a comparative resource for plants

More...
Gramenei
AT5G28530.1; AT5G28530.1; AT5G28530

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT5G28530

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF262043 Genomic DNA Translation: AAF88018.1 Sequence problems.
CP002688 Genomic DNA Translation: AED93811.1
RefSeqiNP_198205.2, NM_122736.2

3D structure databases

SMRiQ9LKR4
ModBaseiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G28530.1

Proteomic databases

PaxDbiQ9LKR4
PRIDEiQ9LKR4

Genome annotation databases

EnsemblPlantsiAT5G28530.1; AT5G28530.1; AT5G28530
GeneIDi832948
GrameneiAT5G28530.1; AT5G28530.1; AT5G28530
KEGGiath:AT5G28530

Organism-specific databases

AraportiAT5G28530
TAIRilocus:2182778 AT5G28530

Phylogenomic databases

eggNOGiENOG410IHRQ Eukaryota
ENOG411183B LUCA
HOGENOMiHOG000006468
InParanoidiQ9LKR4
OMAiDFEHQWN
OrthoDBi207622at2759
PhylomeDBiQ9LKR4

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9LKR4

Gene expression databases

ExpressionAtlasiQ9LKR4 baseline and differential
GenevisibleiQ9LKR4 AT

Family and domain databases

InterProiView protein in InterPro
IPR004330 FAR1_DNA_bnd_dom
IPR031052 FHY3/FAR1
IPR018289 MULE_transposase_dom
IPR006564 Znf_PMZ
IPR007527 Znf_SWIM
PANTHERiPTHR31669 PTHR31669, 1 hit
PfamiView protein in Pfam
PF03101 FAR1, 1 hit
PF10551 MULE, 1 hit
PF04434 SWIM, 1 hit
SMARTiView protein in SMART
SM00575 ZnF_PMZ, 1 hit
PROSITEiView protein in PROSITE
PS50966 ZF_SWIM, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiFRS10_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9LKR4
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: September 1, 2009
Last modified: December 11, 2019
This is version 85 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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