UniProtKB - Q9LK57 (PP226_ARATH)
Protein
Pentatricopeptide repeat-containing protein At3g13160, mitochondrial
Gene
At3g13160
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Names & Taxonomyi
Protein namesi | Recommended name: Pentatricopeptide repeat-containing protein At3g13160, mitochondrial |
Gene namesi | Ordered Locus Names:At3g13160 ORF Names:MJG19.11 |
Organismi | Arabidopsis thaliana (Mouse-ear cress) |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT3G13160 |
TAIRi | locus:2090034, AT3G13160 |
Subcellular locationi
Mitochondrion
- Mitochondrion 1 Publication
Cytosol
- cytosol Source: TAIR
Mitochondrion
- mitochondrion Source: TAIR
Keywords - Cellular componenti
MitochondrionPTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Transit peptidei | 1 – 24 | MitochondrionSequence analysisAdd BLAST | 24 | |
ChainiPRO_0000356085 | 25 – 394 | Pentatricopeptide repeat-containing protein At3g13160, mitochondrialAdd BLAST | 370 |
Proteomic databases
PaxDbi | Q9LK57 |
PRIDEi | Q9LK57 |
ProteomicsDBi | 248947 |
PTM databases
SwissPalmi | Q9LK57 |
Expressioni
Gene expression databases
ExpressionAtlasi | Q9LK57, baseline and differential |
Genevisiblei | Q9LK57, AT |
Interactioni
Protein-protein interaction databases
BioGRIDi | 5839, 3 interactors |
IntActi | Q9LK57, 3 interactors |
STRINGi | 3702.AT3G13160.1 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Repeati | 105 – 139 | PPR 1Add BLAST | 35 | |
Repeati | 140 – 170 | PPR 2Add BLAST | 31 | |
Repeati | 176 – 210 | PPR 3Add BLAST | 35 | |
Repeati | 211 – 245 | PPR 4Add BLAST | 35 | |
Repeati | 246 – 280 | PPR 5Add BLAST | 35 | |
Repeati | 281 – 315 | PPR 6Add BLAST | 35 | |
Repeati | 316 – 350 | PPR 7Add BLAST | 35 | |
Repeati | 351 – 385 | PPR 8Add BLAST | 35 |
Sequence similaritiesi
Keywords - Domaini
Repeat, Transit peptidePhylogenomic databases
eggNOGi | KOG4197, Eukaryota |
HOGENOMi | CLU_002706_10_3_1 |
InParanoidi | Q9LK57 |
OMAi | FRWIEEI |
OrthoDBi | 1344243at2759 |
PhylomeDBi | Q9LK57 |
Family and domain databases
Gene3Di | 1.25.40.10, 3 hits |
InterProi | View protein in InterPro IPR002885, Pentatricopeptide_repeat IPR011990, TPR-like_helical_dom_sf |
Pfami | View protein in Pfam PF01535, PPR, 1 hit PF13041, PPR_2, 3 hits |
TIGRFAMsi | TIGR00756, PPR, 4 hits |
PROSITEi | View protein in PROSITE PS51375, PPR, 8 hits |
i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
Q9LK57-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD
60 70 80 90 100
PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
110 120 130 140 150
PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA
160 170 180 190 200
CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
210 220 230 240 250
DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY
260 270 280 290 300
NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
310 320 330 340 350
AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV
360 370 380 390
DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sequence conflicti | 18 | H → P in AAM67043 (Ref. 4) Curated | 1 | |
Sequence conflicti | 141 | A → V in AAM67043 (Ref. 4) Curated | 1 | |
Sequence conflicti | 165 | K → E in AAM67043 (Ref. 4) Curated | 1 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AP000375 Genomic DNA Translation: BAB01407.1 CP002686 Genomic DNA Translation: AEE75303.1 AY136471 mRNA Translation: AAM97136.1 BT002597 mRNA Translation: AAO00957.1 AY088725 mRNA Translation: AAM67043.1 |
RefSeqi | NP_566445.1, NM_112155.2 |
Genome annotation databases
EnsemblPlantsi | AT3G13160.1; AT3G13160.1; AT3G13160 |
GeneIDi | 820505 |
Gramenei | AT3G13160.1; AT3G13160.1; AT3G13160 |
KEGGi | ath:AT3G13160 |
Similar proteinsi
Cross-referencesi
Web resourcesi
Pentatricopeptide repeat proteins |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AP000375 Genomic DNA Translation: BAB01407.1 CP002686 Genomic DNA Translation: AEE75303.1 AY136471 mRNA Translation: AAM97136.1 BT002597 mRNA Translation: AAO00957.1 AY088725 mRNA Translation: AAM67043.1 |
RefSeqi | NP_566445.1, NM_112155.2 |
3D structure databases
SMRi | Q9LK57 |
ModBasei | Search... |
Protein-protein interaction databases
BioGRIDi | 5839, 3 interactors |
IntActi | Q9LK57, 3 interactors |
STRINGi | 3702.AT3G13160.1 |
PTM databases
SwissPalmi | Q9LK57 |
Proteomic databases
PaxDbi | Q9LK57 |
PRIDEi | Q9LK57 |
ProteomicsDBi | 248947 |
Genome annotation databases
EnsemblPlantsi | AT3G13160.1; AT3G13160.1; AT3G13160 |
GeneIDi | 820505 |
Gramenei | AT3G13160.1; AT3G13160.1; AT3G13160 |
KEGGi | ath:AT3G13160 |
Organism-specific databases
Araporti | AT3G13160 |
TAIRi | locus:2090034, AT3G13160 |
Phylogenomic databases
eggNOGi | KOG4197, Eukaryota |
HOGENOMi | CLU_002706_10_3_1 |
InParanoidi | Q9LK57 |
OMAi | FRWIEEI |
OrthoDBi | 1344243at2759 |
PhylomeDBi | Q9LK57 |
Miscellaneous databases
PROi | PR:Q9LK57 |
Gene expression databases
ExpressionAtlasi | Q9LK57, baseline and differential |
Genevisiblei | Q9LK57, AT |
Family and domain databases
Gene3Di | 1.25.40.10, 3 hits |
InterProi | View protein in InterPro IPR002885, Pentatricopeptide_repeat IPR011990, TPR-like_helical_dom_sf |
Pfami | View protein in Pfam PF01535, PPR, 1 hit PF13041, PPR_2, 3 hits |
TIGRFAMsi | TIGR00756, PPR, 4 hits |
PROSITEi | View protein in PROSITE PS51375, PPR, 8 hits |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | PP226_ARATH | |
Accessioni | Q9LK57Primary (citable) accession number: Q9LK57 Secondary accession number(s): Q8L8Z2 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | December 16, 2008 |
Last sequence update: | October 1, 2000 | |
Last modified: | December 2, 2020 | |
This is version 105 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Arabidopsis thaliana
Arabidopsis thaliana: entries and gene names - SIMILARITY comments
Index of protein domains and families