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Protein

Pentatricopeptide repeat-containing protein At3g24000, mitochondrial

Gene

PCMP-H87

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At3g24000, mitochondrial
Gene namesi
Name:PCMP-H87
Ordered Locus Names:At3g24000
ORF Names:F14O13.19
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G24000

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 63MitochondrionSequence analysisAdd BLAST63
ChainiPRO_000035611164 – 633Pentatricopeptide repeat-containing protein At3g24000, mitochondrialAdd BLAST570

Proteomic databases

PaxDbiQ9LIQ7

PTM databases

iPTMnetiQ9LIQ7

Expressioni

Gene expression databases

ExpressionAtlasiQ9LIQ7 baseline and differential
GenevisibleiQ9LIQ7 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G24000.1

Structurei

3D structure databases

ProteinModelPortaliQ9LIQ7
SMRiQ9LIQ7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati94 – 124PPR 1Add BLAST31
Repeati125 – 159PPR 2Add BLAST35
Repeati160 – 194PPR 3Add BLAST35
Repeati195 – 225PPR 4Add BLAST31
Repeati226 – 260PPR 5Add BLAST35
Repeati261 – 295PPR 6Add BLAST35
Repeati296 – 326PPR 7Add BLAST31
Repeati327 – 361PPR 8Add BLAST35
Repeati362 – 396PPR 9Add BLAST35
Repeati397 – 431PPR 10Add BLAST35

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni432 – 507Type E motifAdd BLAST76
Regioni508 – 538Type E(+) motifAdd BLAST31
Regioni539 – 633Type DYW motifAdd BLAST95

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9LIQ7
OrthoDBiEOG093603UO
PhylomeDBiQ9LIQ7

Family and domain databases

Gene3Di1.25.40.10, 3 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 2 hits
PF13041 PPR_2, 3 hits
SUPFAMiSSF48452 SSF48452, 3 hits
TIGRFAMsiTIGR00756 PPR, 6 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 10 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LIQ7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALRFPPRLL SQLKLSRRLN SLPAPVSEDS EDESLKFPSN DLLLRTSSND
60 70 80 90 100
LEGSYIPADR RFYNTLLKKC TVFKLLIQGR IVHAHILQSI FRHDIVMGNT
110 120 130 140 150
LLNMYAKCGS LEEARKVFEK MPQRDFVTWT TLISGYSQHD RPCDALLFFN
160 170 180 190 200
QMLRFGYSPN EFTLSSVIKA AAAERRGCCG HQLHGFCVKC GFDSNVHVGS
210 220 230 240 250
ALLDLYTRYG LMDDAQLVFD ALESRNDVSW NALIAGHARR SGTEKALELF
260 270 280 290 300
QGMLRDGFRP SHFSYASLFG ACSSTGFLEQ GKWVHAYMIK SGEKLVAFAG
310 320 330 340 350
NTLLDMYAKS GSIHDARKIF DRLAKRDVVS WNSLLTAYAQ HGFGKEAVWW
360 370 380 390 400
FEEMRRVGIR PNEISFLSVL TACSHSGLLD EGWHYYELMK KDGIVPEAWH
410 420 430 440 450
YVTVVDLLGR AGDLNRALRF IEEMPIEPTA AIWKALLNAC RMHKNTELGA
460 470 480 490 500
YAAEHVFELD PDDPGPHVIL YNIYASGGRW NDAARVRKKM KESGVKKEPA
510 520 530 540 550
CSWVEIENAI HMFVANDERH PQREEIARKW EEVLAKIKEL GYVPDTSHVI
560 570 580 590 600
VHVDQQEREV NLQYHSEKIA LAFALLNTPP GSTIHIKKNI RVCGDCHTAI
610 620 630
KLASKVVGRE IIVRDTNRFH HFKDGNCSCK DYW
Length:633
Mass (Da):71,932
Last modified:October 1, 2000 - v1
Checksum:iCC6CA8B13E1A20E9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP001297 Genomic DNA Translation: BAB03018.1
CP002686 Genomic DNA Translation: AEE76843.2
RefSeqiNP_001319627.1, NM_001338664.1

Genome annotation databases

EnsemblPlantsiAT3G24000.1; AT3G24000.1; AT3G24000
GeneIDi821984
GrameneiAT3G24000.1; AT3G24000.1; AT3G24000
KEGGiath:AT3G24000

Similar proteinsi

Entry informationi

Entry nameiPP252_ARATH
AccessioniPrimary (citable) accession number: Q9LIQ7
Secondary accession number(s): F4J5C2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: October 1, 2000
Last modified: April 25, 2018
This is version 98 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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