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Protein

Pentatricopeptide repeat-containing protein At3g22150, chloroplastic

Gene

PCMP-E95

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • chloroplast RNA modification Source: TAIR
  • mitochondrial mRNA modification Source: TAIR

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At3g22150, chloroplastic
Gene namesi
Name:PCMP-E95
Ordered Locus Names:At3g22150
ORF Names:MKA23.11
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G22150
TAIRilocus:2090444 AT3G22150

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 50ChloroplastSequence analysisAdd BLAST50
ChainiPRO_000035610551 – 820Pentatricopeptide repeat-containing protein At3g22150, chloroplasticAdd BLAST770

Proteomic databases

PaxDbiQ9LIE7

Expressioni

Gene expression databases

ExpressionAtlasiQ9LIE7 baseline and differential
GenevisibleiQ9LIE7 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G22150.1

Structurei

3D structure databases

ProteinModelPortaliQ9LIE7
SMRiQ9LIE7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati69 – 99PPR 1Add BLAST31
Repeati106 – 136PPR 2Add BLAST31
Repeati141 – 177PPR 3Add BLAST37
Repeati178 – 212PPR 4Add BLAST35
Repeati213 – 247PPR 5Add BLAST35
Repeati250 – 284PPR 6Add BLAST35
Repeati285 – 316PPR 7Add BLAST32
Repeati317 – 347PPR 8Add BLAST31
Repeati352 – 382PPR 9Add BLAST31
Repeati383 – 417PPR 10Add BLAST35
Repeati418 – 452PPR 11Add BLAST35
Repeati485 – 519PPR 12Add BLAST35
Repeati520 – 550PPR 13Add BLAST31
Repeati555 – 585PPR 14Add BLAST31
Repeati586 – 620PPR 15Add BLAST35
Repeati621 – 651PPR 16Add BLAST31
Repeati657 – 691PPR 17Add BLAST35

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni693 – 770Type E motifAdd BLAST78
Regioni771 – 801Type E(+) motifAdd BLAST31

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi7 – 13Poly-Pro7

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000241004
InParanoidiQ9LIE7
OMAiMLVYEMQ
OrthoDBiEOG0936027I
PhylomeDBiQ9LIE7

Family and domain databases

Gene3Di1.25.40.10, 6 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 2 hits
PF13041 PPR_2, 4 hits
TIGRFAMsiTIGR00756 PPR, 4 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 13 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LIE7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAGSALPLPP PPPLSLQSPS QNQTRHSSTF SPPTLTPQTP SIRSRLSKIC
60 70 80 90 100
QDGNPQLARQ LFDAIPKPTT VLWNTIIIGF ICNNLPHEAL LFYSRMKKTA
110 120 130 140 150
PFTNCDAYTY SSTLKACAET KNLKAGKAVH CHLIRCLQNS SRVVHNSLMN
160 170 180 190 200
MYVSCLNAPD CFEYDVVRKV FDNMRRKNVV AWNTLISWYV KTGRNAEACR
210 220 230 240 250
QFGIMMRMEV KPSPVSFVNV FPAVSISRSI KKANVFYGLM LKLGDEYVKD
260 270 280 290 300
LFVVSSAISM YAELGDIESS RRVFDSCVER NIEVWNTMIG VYVQNDCLVE
310 320 330 340 350
SIELFLEAIG SKEIVSDEVT YLLAASAVSA LQQVELGRQF HGFVSKNFRE
360 370 380 390 400
LPIVIVNSLM VMYSRCGSVH KSFGVFLSMR ERDVVSWNTM ISAFVQNGLD
410 420 430 440 450
DEGLMLVYEM QKQGFKIDYI TVTALLSAAS NLRNKEIGKQ THAFLIRQGI
460 470 480 490 500
QFEGMNSYLI DMYSKSGLIR ISQKLFEGSG YAERDQATWN SMISGYTQNG
510 520 530 540 550
HTEKTFLVFR KMLEQNIRPN AVTVASILPA CSQIGSVDLG KQLHGFSIRQ
560 570 580 590 600
YLDQNVFVAS ALVDMYSKAG AIKYAEDMFS QTKERNSVTY TTMILGYGQH
610 620 630 640 650
GMGERAISLF LSMQESGIKP DAITFVAVLS ACSYSGLIDE GLKIFEEMRE
660 670 680 690 700
VYNIQPSSEH YCCITDMLGR VGRVNEAYEF VKGLGEEGNI AELWGSLLGS
710 720 730 740 750
CKLHGELELA ETVSERLAKF DKGKNFSGYE VLLSNMYAEE QKWKSVDKVR
760 770 780 790 800
RGMREKGLKK EVGRSGIEIA GYVNCFVSRD QEHPHSSEIY DVIDGLAKDM
810 820
RGDSFLTTLP TVTPSLELDE
Length:820
Mass (Da):91,850
Last modified:October 1, 2000 - v1
Checksum:i3702D06B9E5ABF8D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP001306 Genomic DNA Translation: BAB03063.1
CP002686 Genomic DNA Translation: AEE76594.1
CP002686 Genomic DNA Translation: ANM64477.1
AK229803 mRNA Translation: BAF01634.1
RefSeqiNP_001326502.1, NM_001338570.1
NP_188854.1, NM_113112.4
UniGeneiAt.37924

Genome annotation databases

EnsemblPlantsiAT3G22150.1; AT3G22150.1; AT3G22150
AT3G22150.2; AT3G22150.2; AT3G22150
GeneIDi821779
GrameneiAT3G22150.1; AT3G22150.1; AT3G22150
AT3G22150.2; AT3G22150.2; AT3G22150
KEGGiath:AT3G22150

Similar proteinsi

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP001306 Genomic DNA Translation: BAB03063.1
CP002686 Genomic DNA Translation: AEE76594.1
CP002686 Genomic DNA Translation: ANM64477.1
AK229803 mRNA Translation: BAF01634.1
RefSeqiNP_001326502.1, NM_001338570.1
NP_188854.1, NM_113112.4
UniGeneiAt.37924

3D structure databases

ProteinModelPortaliQ9LIE7
SMRiQ9LIE7
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G22150.1

Proteomic databases

PaxDbiQ9LIE7

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G22150.1; AT3G22150.1; AT3G22150
AT3G22150.2; AT3G22150.2; AT3G22150
GeneIDi821779
GrameneiAT3G22150.1; AT3G22150.1; AT3G22150
AT3G22150.2; AT3G22150.2; AT3G22150
KEGGiath:AT3G22150

Organism-specific databases

AraportiAT3G22150
TAIRilocus:2090444 AT3G22150

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000241004
InParanoidiQ9LIE7
OMAiMLVYEMQ
OrthoDBiEOG0936027I
PhylomeDBiQ9LIE7

Miscellaneous databases

PROiPR:Q9LIE7

Gene expression databases

ExpressionAtlasiQ9LIE7 baseline and differential
GenevisibleiQ9LIE7 AT

Family and domain databases

Gene3Di1.25.40.10, 6 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 2 hits
PF13041 PPR_2, 4 hits
TIGRFAMsiTIGR00756 PPR, 4 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 13 hits
ProtoNetiSearch...

Entry informationi

Entry nameiPP246_ARATH
AccessioniPrimary (citable) accession number: Q9LIE7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: October 1, 2000
Last modified: April 25, 2018
This is version 98 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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