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Entry version 116 (02 Jun 2021)
Sequence version 1 (01 Oct 2000)
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Protein

Cellulose synthase-like protein D2

Gene

CSLD2

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei441Sequence analysis1
Active sitei873Sequence analysis1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionGlycosyltransferase, Transferase
Biological processCell wall biogenesis/degradation

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes for plant species

More...
PlantReactomei
R-OSA-1119314, Cellulose biosynthesis

Protein family/group databases

Carbohydrate-Active enZymes

More...
CAZyi
GT2, Glycosyltransferase Family 2

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Cellulose synthase-like protein D2 (EC:2.4.1.-)
Alternative name(s):
OsCslD2
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:CSLD2
Ordered Locus Names:Os06g0111800, LOC_Os06g02180
ORF Names:OsJ_019064, P0029D06.17
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza sativa subsp. japonica (Rice)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri39947 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000007752 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 6
  • UP000059680 Componenti: Chromosome 6
  • UP000000763 Componenti: Chromosome 6

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei311 – 331HelicalSequence analysisAdd BLAST21
Transmembranei341 – 361HelicalSequence analysisAdd BLAST21
Transmembranei955 – 975HelicalSequence analysisAdd BLAST21
Transmembranei981 – 1001HelicalSequence analysisAdd BLAST21
Transmembranei1027 – 1047HelicalSequence analysisAdd BLAST21
Transmembranei1070 – 1090HelicalSequence analysisAdd BLAST21
Transmembranei1104 – 1124HelicalSequence analysisAdd BLAST21
Transmembranei1134 – 1154HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Golgi apparatus, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003193931 – 1170Cellulose synthase-like protein D2Add BLAST1170

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9LHZ7

PRoteomics IDEntifications database

More...
PRIDEi
Q9LHZ7

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9LHZ7, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9LHZ7, OS

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
4530.OS06T0111800-02

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 48DisorderedSequence analysisAdd BLAST48
Regioni54 – 73DisorderedSequence analysisAdd BLAST20
Regioni269 – 295DisorderedSequence analysisAdd BLAST27

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili527 – 551Sequence analysisAdd BLAST25

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1 – 21Polar residuesSequence analysisAdd BLAST21

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Keywords - Domaini

Coiled coil, Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG502QU14, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_001418_1_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9LHZ7

Identification of Orthologs from Complete Genome Data

More...
OMAi
TELMNRP

Database of Orthologous Groups

More...
OrthoDBi
679241at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.30.40.10, 1 hit
3.90.550.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR005150, Cellulose_synth
IPR029044, Nucleotide-diphossugar_trans
IPR013083, Znf_RING/FYVE/PHD

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF03552, Cellulose_synt, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF53448, SSF53448, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q9LHZ7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MASSGGGGLR HSNSSRLSRM SYSGEDGRAQ APGGGGDRPM VTFARRTHSG
60 70 80 90 100
RYVSYSRDDL DSELGNSGDM SPESGQEFLN YHVTIPATPD NQPMDPAISA
110 120 130 140 150
RVEEQYVSNS LFTGGFNSVT RAHLMDKVIE SEASHPQMAG AKGSSCAING
160 170 180 190 200
CDAKVMSDER GDDILPCECD FKICADCFAD AVKNGGACPG CKDPYKATEL
210 220 230 240 250
DDVVGARPTL SLPPPPGGLP ASRMERRLSI MRSQKAMTRS QTGDWDHNRW
260 270 280 290 300
LFETKGTYGY GNAIWPKENE VDNGGGGGGG GGLGGGDGQP AEFTSKPWRP
310 320 330 340 350
LTRKLKIPAG VLSPYRLLIL IRMAVLGLFL AWRIKHKNED AMWLWGMSVV
360 370 380 390 400
CELWFGLSWL LDQLPKLCPV NRATDLAVLK DKFETPTPSN PNGRSDLPGL
410 420 430 440 450
DIFVSTADPE KEPPLVTANT ILSILAADYP VEKLSCYVSD DGGALLTFEA
460 470 480 490 500
MAEAASFANM WVPFCRKHDI EPRNPESYFN LKRDPYKNKV RSDFVKDRRR
510 520 530 540 550
VKREYDEFKV RINSLPDSIR RRSDAYHARE EIKAMKRQRE AALDDVVEAV
560 570 580 590 600
KIPKATWMAD GTHWPGTWIQ PSAEHARGDH AGIIQVMLKP PSDDPLYGTS
610 620 630 640 650
GEEGRPLDFT EVDIRLPMLV YVSREKRPGY DHNKKAGAMN ALVRSSAVMS
660 670 680 690 700
NGPFILNLDC DHYVYNSQAF REGMCFMMDR GGDRIGYVQF PQRFEGIDPS
710 720 730 740 750
DRYANHNTVF FDVNMRALDG IMGPVYVGTG CLFRRIALYG FDPPRSKEHS
760 770 780 790 800
GCCSCCFPQR RKVKTSTVAS EERQALRMAD FDDEEMNMSQ FPKKFGNSNF
810 820 830 840 850
LINSIPIAEF QGRPLADHPG VKNGRPPGAL TVPRDLLDAS TVAEAISVIS
860 870 880 890 900
CWYEDKTEWG QRVGWIYGSV TEDVVTGYRM HNRGWKSVYC VTKRDAFRGT
910 920 930 940 950
APINLTDRLH QVLRWATGSV EIFFSRNNAL LASRKMKFLQ RIAYLNVGIY
960 970 980 990 1000
PFTSIFLIVY CFLPALSLFS GQFIVRTLNV TFLTYLLVIT LTMCMLAVLE
1010 1020 1030 1040 1050
IKWSGISLEE WWRNEQFWLI GGTSAHLAAV LQGLLKVIAG IEISFTLTSK
1060 1070 1080 1090 1100
SGGDEADDEF ADLYIVKWTS LMIPPIVIMM VNLIAIAVGF SRTIYSEIPQ
1110 1120 1130 1140 1150
WSKLLGGVFF SFWVLAHLYP FAKGLMGRRG RTPTIVFVWS GLLAITISLL
1160 1170
WVAINPPSQN SQIGGSFTFP
Length:1,170
Mass (Da):130,138
Last modified:October 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i2BD863A83DB451AF
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0P0WS24A0A0P0WS24_ORYSJ
Os06g0111800 protein
Os06g0111800, OSNPB_060111800
842Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AP001552 Genomic DNA Translation: BAA93027.1
AP008212 Genomic DNA Translation: BAF18503.1
AP014962 Genomic DNA Translation: BAS95797.1
CM000143 Genomic DNA Translation: EAZ35581.1
AK105393 mRNA Translation: BAG97224.1
AF435649 mRNA Translation: AAL38534.1
BK000900 Genomic DNA Translation: DAA01753.1

NCBI Reference Sequences

More...
RefSeqi
XP_015643356.1, XM_015787870.1
XP_015643357.1, XM_015787871.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
Os06t0111800-01; Os06t0111800-01; Os06g0111800
Os06t0111800-02; Os06t0111800-02; Os06g0111800

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
4339895

Gramene; a comparative resource for plants

More...
Gramenei
Os06t0111800-01; Os06t0111800-01; Os06g0111800
Os06t0111800-02; Os06t0111800-02; Os06g0111800

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
osa:4339895

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP001552 Genomic DNA Translation: BAA93027.1
AP008212 Genomic DNA Translation: BAF18503.1
AP014962 Genomic DNA Translation: BAS95797.1
CM000143 Genomic DNA Translation: EAZ35581.1
AK105393 mRNA Translation: BAG97224.1
AF435649 mRNA Translation: AAL38534.1
BK000900 Genomic DNA Translation: DAA01753.1
RefSeqiXP_015643356.1, XM_015787870.1
XP_015643357.1, XM_015787871.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi4530.OS06T0111800-02

Protein family/group databases

CAZyiGT2, Glycosyltransferase Family 2

Proteomic databases

PaxDbiQ9LHZ7
PRIDEiQ9LHZ7

Genome annotation databases

EnsemblPlantsiOs06t0111800-01; Os06t0111800-01; Os06g0111800
Os06t0111800-02; Os06t0111800-02; Os06g0111800
GeneIDi4339895
GrameneiOs06t0111800-01; Os06t0111800-01; Os06g0111800
Os06t0111800-02; Os06t0111800-02; Os06g0111800
KEGGiosa:4339895

Phylogenomic databases

eggNOGiENOG502QU14, Eukaryota
HOGENOMiCLU_001418_1_0_1
InParanoidiQ9LHZ7
OMAiTELMNRP
OrthoDBi679241at2759

Enzyme and pathway databases

PlantReactomeiR-OSA-1119314, Cellulose biosynthesis

Gene expression databases

ExpressionAtlasiQ9LHZ7, baseline and differential
GenevisibleiQ9LHZ7, OS

Family and domain databases

Gene3Di3.30.40.10, 1 hit
3.90.550.10, 1 hit
InterProiView protein in InterPro
IPR005150, Cellulose_synth
IPR029044, Nucleotide-diphossugar_trans
IPR013083, Znf_RING/FYVE/PHD
PfamiView protein in Pfam
PF03552, Cellulose_synt, 1 hit
SUPFAMiSSF53448, SSF53448, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCSLD2_ORYSJ
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9LHZ7
Secondary accession number(s): B7EXX7, Q7PC68, Q8W1N0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: October 1, 2000
Last modified: June 2, 2021
This is version 116 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families
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