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Entry version 127 (08 May 2019)
Sequence version 1 (01 Oct 2000)
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Protein

60S ribosomal protein L7-4

Gene

RPL7D

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
60S ribosomal protein L7-4
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RPL7D
Ordered Locus Names:At3g13580
ORF Names:K20M4.2
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 3

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT3G13580

The Arabidopsis Information Resource

More...
TAIRi
locus:2086809 AT3G13580

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001046411 – 24460S ribosomal protein L7-4Add BLAST244

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9LHP1

PRoteomics IDEntifications database

More...
PRIDEi
Q9LHP1

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9LHP1 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9LHP1 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
5894, 3 interactors

Protein interaction database and analysis system

More...
IntActi
Q9LHP1, 1 interactor

STRING: functional protein association networks

More...
STRINGi
3702.AT3G13580.3

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9LHP1

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG3184 Eukaryota
COG1841 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000170917

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9LHP1

KEGG Orthology (KO)

More...
KOi
K02937

Identification of Orthologs from Complete Genome Data

More...
OMAi
CFEANDF

Database of Orthologous Groups

More...
OrthoDBi
1544778at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9LHP1

Family and domain databases

Conserved Domains Database

More...
CDDi
cd01657 Ribosomal_L7_archeal_euk, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.15.30, 1 hit
3.30.1390.20, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR036919 L30_ferredoxin-like_sf
IPR023106 Ribosomal_L30_central_dom_arc
IPR018038 Ribosomal_L30_CS
IPR016082 Ribosomal_L30_ferredoxin-like
IPR012988 Ribosomal_L30_N
IPR039699 Ribosomal_L7/L30
IPR005998 Ribosomal_L7_euk
IPR035808 Ribosomal_L7_euk_arc

The PANTHER Classification System

More...
PANTHERi
PTHR11524 PTHR11524, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00327 Ribosomal_L30, 1 hit
PF08079 Ribosomal_L30_N, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF55129 SSF55129, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR01310 uL30_euk, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00634 RIBOSOMAL_L30, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9LHP1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA
60 70 80 90 100
KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
110 120 130 140 150
TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI
160 170 180 190 200
YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
210 220 230 240
NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN
Length:244
Mass (Da):28,433
Last modified:October 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i44B4AD5B183C5A6B
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AP002038 Genomic DNA Translation: BAB02600.1
CP002686 Genomic DNA Translation: AEE75376.1
CP002686 Genomic DNA Translation: AEE75377.1
CP002686 Genomic DNA Translation: AEE75378.1
CP002686 Genomic DNA Translation: ANM64459.1
CP002686 Genomic DNA Translation: ANM64460.1
CP002686 Genomic DNA Translation: ANM64461.1
CP002686 Genomic DNA Translation: ANM64462.1
CP002686 Genomic DNA Translation: ANM64463.1
CP002686 Genomic DNA Translation: ANM64464.1
AY039900 mRNA Translation: AAK64004.1
AY056112 mRNA Translation: AAL06999.1
AY077675 mRNA Translation: AAL76153.1

NCBI Reference Sequences

More...
RefSeqi
NP_001326486.1, NM_001338062.1
NP_001326487.1, NM_001338061.1
NP_001326488.1, NM_001338060.1
NP_001326489.1, NM_001338059.1
NP_001326490.1, NM_001338058.1
NP_001326491.1, NM_001338057.1
NP_187967.1, NM_112204.3
NP_974304.1, NM_202575.1
NP_974305.1, NM_202576.2

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT3G13580.1; AT3G13580.1; AT3G13580
AT3G13580.2; AT3G13580.2; AT3G13580
AT3G13580.3; AT3G13580.3; AT3G13580
AT3G13580.4; AT3G13580.4; AT3G13580
AT3G13580.5; AT3G13580.5; AT3G13580
AT3G13580.6; AT3G13580.6; AT3G13580
AT3G13580.7; AT3G13580.7; AT3G13580
AT3G13580.8; AT3G13580.8; AT3G13580
AT3G13580.9; AT3G13580.9; AT3G13580

Database of genes from NCBI RefSeq genomes

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GeneIDi
820560

Gramene; a comparative resource for plants

More...
Gramenei
AT3G13580.1; AT3G13580.1; AT3G13580
AT3G13580.2; AT3G13580.2; AT3G13580
AT3G13580.3; AT3G13580.3; AT3G13580
AT3G13580.4; AT3G13580.4; AT3G13580
AT3G13580.5; AT3G13580.5; AT3G13580
AT3G13580.6; AT3G13580.6; AT3G13580
AT3G13580.7; AT3G13580.7; AT3G13580
AT3G13580.8; AT3G13580.8; AT3G13580
AT3G13580.9; AT3G13580.9; AT3G13580

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT3G13580

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002038 Genomic DNA Translation: BAB02600.1
CP002686 Genomic DNA Translation: AEE75376.1
CP002686 Genomic DNA Translation: AEE75377.1
CP002686 Genomic DNA Translation: AEE75378.1
CP002686 Genomic DNA Translation: ANM64459.1
CP002686 Genomic DNA Translation: ANM64460.1
CP002686 Genomic DNA Translation: ANM64461.1
CP002686 Genomic DNA Translation: ANM64462.1
CP002686 Genomic DNA Translation: ANM64463.1
CP002686 Genomic DNA Translation: ANM64464.1
AY039900 mRNA Translation: AAK64004.1
AY056112 mRNA Translation: AAL06999.1
AY077675 mRNA Translation: AAL76153.1
RefSeqiNP_001326486.1, NM_001338062.1
NP_001326487.1, NM_001338061.1
NP_001326488.1, NM_001338060.1
NP_001326489.1, NM_001338059.1
NP_001326490.1, NM_001338058.1
NP_001326491.1, NM_001338057.1
NP_187967.1, NM_112204.3
NP_974304.1, NM_202575.1
NP_974305.1, NM_202576.2

3D structure databases

SMRiQ9LHP1
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi5894, 3 interactors
IntActiQ9LHP1, 1 interactor
STRINGi3702.AT3G13580.3

Proteomic databases

PaxDbiQ9LHP1
PRIDEiQ9LHP1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G13580.1; AT3G13580.1; AT3G13580
AT3G13580.2; AT3G13580.2; AT3G13580
AT3G13580.3; AT3G13580.3; AT3G13580
AT3G13580.4; AT3G13580.4; AT3G13580
AT3G13580.5; AT3G13580.5; AT3G13580
AT3G13580.6; AT3G13580.6; AT3G13580
AT3G13580.7; AT3G13580.7; AT3G13580
AT3G13580.8; AT3G13580.8; AT3G13580
AT3G13580.9; AT3G13580.9; AT3G13580
GeneIDi820560
GrameneiAT3G13580.1; AT3G13580.1; AT3G13580
AT3G13580.2; AT3G13580.2; AT3G13580
AT3G13580.3; AT3G13580.3; AT3G13580
AT3G13580.4; AT3G13580.4; AT3G13580
AT3G13580.5; AT3G13580.5; AT3G13580
AT3G13580.6; AT3G13580.6; AT3G13580
AT3G13580.7; AT3G13580.7; AT3G13580
AT3G13580.8; AT3G13580.8; AT3G13580
AT3G13580.9; AT3G13580.9; AT3G13580
KEGGiath:AT3G13580

Organism-specific databases

AraportiAT3G13580
TAIRilocus:2086809 AT3G13580

Phylogenomic databases

eggNOGiKOG3184 Eukaryota
COG1841 LUCA
HOGENOMiHOG000170917
InParanoidiQ9LHP1
KOiK02937
OMAiCFEANDF
OrthoDBi1544778at2759
PhylomeDBiQ9LHP1

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9LHP1

Gene expression databases

ExpressionAtlasiQ9LHP1 baseline and differential
GenevisibleiQ9LHP1 AT

Family and domain databases

CDDicd01657 Ribosomal_L7_archeal_euk, 1 hit
Gene3Di1.10.15.30, 1 hit
3.30.1390.20, 1 hit
InterProiView protein in InterPro
IPR036919 L30_ferredoxin-like_sf
IPR023106 Ribosomal_L30_central_dom_arc
IPR018038 Ribosomal_L30_CS
IPR016082 Ribosomal_L30_ferredoxin-like
IPR012988 Ribosomal_L30_N
IPR039699 Ribosomal_L7/L30
IPR005998 Ribosomal_L7_euk
IPR035808 Ribosomal_L7_euk_arc
PANTHERiPTHR11524 PTHR11524, 1 hit
PfamiView protein in Pfam
PF00327 Ribosomal_L30, 1 hit
PF08079 Ribosomal_L30_N, 1 hit
SUPFAMiSSF55129 SSF55129, 1 hit
TIGRFAMsiTIGR01310 uL30_euk, 1 hit
PROSITEiView protein in PROSITE
PS00634 RIBOSOMAL_L30, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRL74_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9LHP1
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 21, 2003
Last sequence update: October 1, 2000
Last modified: May 8, 2019
This is version 127 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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