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Protein

AAA-ATPase At3g28540

Gene

At3g28540

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + H2O = ADP + phosphate.By similarity

Cofactori

Mg2+By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi246 – 253ATPSequence analysis8

GO - Molecular functioni

Keywordsi

Molecular functionHydrolase
LigandATP-binding, Magnesium, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
AAA-ATPase At3g28540 (EC:3.6.1.3By similarity)
Gene namesi
Ordered Locus Names:At3g28540Imported
ORF Names:T20D4.4Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G28540
TAIRilocus:2098648 AT3G28540

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei7 – 25HelicalSequence analysisAdd BLAST19

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004347091 – 510AAA-ATPase At3g28540Add BLAST510

Proteomic databases

PaxDbiQ9LH82

PTM databases

iPTMnetiQ9LH82

Expressioni

Gene expression databases

ExpressionAtlasiQ9LH82 baseline and differential
GenevisibleiQ9LH82 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G28540.1

Structurei

3D structure databases

ProteinModelPortaliQ9LH82
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi314 – 340Glu-richPROSITE-ProRule annotationAdd BLAST27

Sequence similaritiesi

Belongs to the AAA ATPase family. BCS1 subfamily.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0743 Eukaryota
COG0465 LUCA
HOGENOMiHOG000237995
OMAiTVIFLWP
OrthoDBiEOG09360FB5
PhylomeDBiQ9LH82

Family and domain databases

InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR025753 AAA_N_dom
IPR003959 ATPase_AAA_core
IPR027417 P-loop_NTPase
PfamiView protein in Pfam
PF00004 AAA, 1 hit
PF14363 AAA_assoc, 1 hit
SMARTiView protein in SMART
SM00382 AAA, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9LH82-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MFEAGGLFGF TGTTMASLMF FWSVYRQFVP YQIRDYLEKC FYKMFGLVSN
60 70 80 90 100
SVHIKFTEYT EDKGLKKSQA YDLIRNYLSS KSTARAQRLK ANESKNSKSL
110 120 130 140 150
VLSLDNHEAV EDVFQGVKVV WSLSVWKSND QADSSEKRYL TLSFHNRYRE
160 170 180 190 200
MITTTYLDHV LREGKEIGLK NRERKLYTNN SSQDYSAWRE GRWSNVPFDH
210 220 230 240 250
PATFETLAMD LEKKEGMKKD LIKFTKGKDY YRKVGKPWKR GYLLFGPPGT
260 270 280 290 300
GKSTMISAMA NFLEYDVYDL ELTTVKDNSE LKKLMLDTKG KSIVVIEDID
310 320 330 340 350
CSLDLTGQRK KKKEEDEDEE EEEKKKEAEK LLKRERGERE SKVTLSGLLN
360 370 380 390 400
AIDGLWSACS GEKIIVFTTN YLDKLDPALI RRGRMDNHIE MSYCRFEAFK
410 420 430 440 450
VLAKNYLEIE SHDLFGEIKR LVEETDMSPA DVAENLMPKS DEDDADICLT
460 470 480 490 500
RLVKSLEEEK EKAKKLAEEE KMKKAARDAR RIKKKAEEEH KKKNKVEENG
510
DVSHDNGNHI
Length:510
Mass (Da):59,151
Last modified:October 1, 2000 - v1
Checksum:iD372C2CD616DC111
GO
Isoform 2 (identifier: Q9LH82-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     508-510: NHI → K

Note: Derived from EST data. No experimental confirmation available.Imported
Show »
Length:508
Mass (Da):58,915
Checksum:iD5BD616DC111C56F
GO

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_057974508 – 510NHI → K in isoform 2. 3

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002059 Genomic DNA Translation: BAB01955.1
CP002686 Genomic DNA Translation: AEE77457.1
CP002686 Genomic DNA Translation: AEE77458.1
RefSeqiNP_001030789.1, NM_001035712.1 [Q9LH82-2]
NP_189495.1, NM_113774.3 [Q9LH82-1]
UniGeneiAt.42777

Genome annotation databases

EnsemblPlantsiAT3G28540.1; AT3G28540.1; AT3G28540 [Q9LH82-1]
AT3G28540.2; AT3G28540.2; AT3G28540 [Q9LH82-2]
GeneIDi822484
GrameneiAT3G28540.1; AT3G28540.1; AT3G28540 [Q9LH82-1]
AT3G28540.2; AT3G28540.2; AT3G28540 [Q9LH82-2]
KEGGiath:AT3G28540

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiAATP7_ARATH
AccessioniPrimary (citable) accession number: Q9LH82
Secondary accession number(s): Q2V3R7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 11, 2015
Last sequence update: October 1, 2000
Last modified: April 25, 2018
This is version 123 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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