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Protein

Pentatricopeptide repeat-containing protein At3g53360, mitochondrial

Gene

PCMP-E86

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At3g53360, mitochondrial
Gene namesi
Name:PCMP-E86
Ordered Locus Names:At3g53360
ORF Names:F4P12_60
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G53360
TAIRilocus:2083961 AT3G53360

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 70MitochondrionSequence analysisAdd BLAST70
ChainiPRO_000035613971 – 768Pentatricopeptide repeat-containing protein At3g53360, mitochondrialAdd BLAST698

Proteomic databases

PaxDbiQ9LFI1
PRIDEiQ9LFI1

PTM databases

iPTMnetiQ9LFI1

Expressioni

Gene expression databases

ExpressionAtlasiQ9LFI1 differential
GenevisibleiQ9LFI1 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G53360.1

Structurei

3D structure databases

ProteinModelPortaliQ9LFI1
SMRiQ9LFI1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati30 – 60PPR 1Add BLAST31
Repeati66 – 100PPR 2Add BLAST35
Repeati101 – 131PPR 3Add BLAST31
Repeati132 – 166PPR 4Add BLAST35
Repeati167 – 201PPR 5Add BLAST35
Repeati202 – 232PPR 6Add BLAST31
Repeati233 – 267PPR 7Add BLAST35
Repeati269 – 303PPR 8Add BLAST35
Repeati304 – 334PPR 9Add BLAST31
Repeati335 – 369PPR 10Add BLAST35
Repeati370 – 404PPR 11Add BLAST35
Repeati405 – 435PPR 12Add BLAST31
Repeati437 – 471PPR 13Add BLAST35
Repeati472 – 506PPR 14Add BLAST35
Repeati507 – 537PPR 15Add BLAST31
Repeati538 – 572PPR 16Add BLAST35
Repeati573 – 608PPR 17Add BLAST36
Repeati609 – 639PPR 18Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni644 – 719Type E motifAdd BLAST76
Regioni720 – 750Type E(+) motifAdd BLAST31

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237569
InParanoidiQ9LFI1
OMAiELGYFEM
OrthoDBiEOG093603T3
PhylomeDBiQ9LFI1

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 2 hits
PF13041 PPR_2, 4 hits
SUPFAMiSSF48452 SSF48452, 1 hit
TIGRFAMsiTIGR00756 PPR, 6 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 18 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LFI1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATMLRLGAR VSVSNSQILA TSSVVSTIKT EELMNDHINS LCKSNFYREA
60 70 80 90 100
LEAFDFAQKN SSFKIRLRTY ISLICACSSS RSLAQGRKIH DHILNSNCKY
110 120 130 140 150
DTILNNHILS MYGKCGSLRD AREVFDFMPE RNLVSYTSVI TGYSQNGQGA
160 170 180 190 200
EAIRLYLKML QEDLVPDQFA FGSIIKACAS SSDVGLGKQL HAQVIKLESS
210 220 230 240 250
SHLIAQNALI AMYVRFNQMS DASRVFYGIP MKDLISWSSI IAGFSQLGFE
260 270 280 290 300
FEALSHLKEM LSFGVFHPNE YIFGSSLKAC SSLLRPDYGS QIHGLCIKSE
310 320 330 340 350
LAGNAIAGCS LCDMYARCGF LNSARRVFDQ IERPDTASWN VIIAGLANNG
360 370 380 390 400
YADEAVSVFS QMRSSGFIPD AISLRSLLCA QTKPMALSQG MQIHSYIIKW
410 420 430 440 450
GFLADLTVCN SLLTMYTFCS DLYCCFNLFE DFRNNADSVS WNTILTACLQ
460 470 480 490 500
HEQPVEMLRL FKLMLVSECE PDHITMGNLL RGCVEISSLK LGSQVHCYSL
510 520 530 540 550
KTGLAPEQFI KNGLIDMYAK CGSLGQARRI FDSMDNRDVV SWSTLIVGYA
560 570 580 590 600
QSGFGEEALI LFKEMKSAGI EPNHVTFVGV LTACSHVGLV EEGLKLYATM
610 620 630 640 650
QTEHGISPTK EHCSCVVDLL ARAGRLNEAE RFIDEMKLEP DVVVWKTLLS
660 670 680 690 700
ACKTQGNVHL AQKAAENILK IDPFNSTAHV LLCSMHASSG NWENAALLRS
710 720 730 740 750
SMKKHDVKKI PGQSWIEIED KIHIFFAEDI FHPERDDIYT VLHNIWSQML
760
DECNPQHKKR LQFIHETG
Length:768
Mass (Da):85,674
Last modified:October 1, 2000 - v1
Checksum:i5A9060E614B44EE9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132966 Genomic DNA Translation: CAB67643.1
CP002686 Genomic DNA Translation: AEE79075.1
CP002686 Genomic DNA Translation: ANM65695.1
PIRiT45876
RefSeqiNP_001319736.1, NM_001339618.1
NP_190904.1, NM_115196.2
UniGeneiAt.53917

Genome annotation databases

EnsemblPlantsiAT3G53360.1; AT3G53360.1; AT3G53360
AT3G53360.2; AT3G53360.2; AT3G53360
GeneIDi824504
GrameneiAT3G53360.1; AT3G53360.1; AT3G53360
AT3G53360.2; AT3G53360.2; AT3G53360
KEGGiath:AT3G53360

Similar proteinsi

Entry informationi

Entry nameiPP280_ARATH
AccessioniPrimary (citable) accession number: Q9LFI1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: October 1, 2000
Last modified: May 23, 2018
This is version 96 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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