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Entry version 108 (22 Apr 2020)
Sequence version 1 (01 Oct 2000)
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Protein

Protein NLP4

Gene

NLP4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Probable transcription factor.By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein NLP4
Short name:
AtNLP4
Alternative name(s):
NIN-like protein 4
Nodule inception protein-like protein 4
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:NLP4
Ordered Locus Names:At1g20640
ORF Names:F2D10.12
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

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Araporti
AT1G20640

The Arabidopsis Information Resource

More...
TAIRi
locus:2030397 AT1G20640

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004014891 – 844Protein NLP4Add BLAST844

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9LE38

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

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ExpressionAtlasi
Q9LE38 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9LE38 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
23892, 3 interactors

Protein interaction database and analysis system

More...
IntActi
Q9LE38, 2 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT1G20640.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini540 – 626RWP-RKPROSITE-ProRule annotationAdd BLAST87
Domaini744 – 827PB1PROSITE-ProRule annotationAdd BLAST84

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi97 – 102Poly-Gly6
Compositional biasi654 – 659Poly-Pro6
Compositional biasi665 – 716Ser-richAdd BLAST52

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IE3G Eukaryota
ENOG41129QX LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_008971_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9LE38

Identification of Orthologs from Complete Genome Data

More...
OMAi
ACITHKL

Database of Orthologous Groups

More...
OrthoDBi
210841at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9LE38

Family and domain databases

Conserved Domains Database

More...
CDDi
cd06407 PB1_NLP, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR000270 PB1_dom
IPR034891 PB1_NLP
IPR003035 RWP-RK_dom

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00564 PB1, 1 hit
PF02042 RWP-RK, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00666 PB1, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51745 PB1, 1 hit
PS51519 RWP_RK, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9LE38-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEDSFLQSEN VVMDADFMDG LLLDGCWLET TDGSEFLNIA PSTSSVSPFD
60 70 80 90 100
PTSFMWSPTQ DTSALCTSGV VSQMYGQDCV ERSSLDEFQW NKRWWIGPGG
110 120 130 140 150
GGSSVTERLV QAVEHIKDYT TARGSLIQLW VPVNRGGKRV LTTKEQPFSH
160 170 180 190 200
DPLCQRLANY REISVNYHFS AEQDDSKALA GLPGRVFLGK LPEWTPDVRF
210 220 230 240 250
FKSEEYPRVH HAQDCDVRGT LAIPVFEQGS KICLGVIEVV MTTEMVKLRP
260 270 280 290 300
ELESICRALQ AVDLRSTELP IPPSLKGCDL SYKAALPEIR NLLRCACETH
310 320 330 340 350
KLPLAQTWVS CQQQNKSGCR HNDENYIHCV STIDDACYVG DPTVREFHEA
360 370 380 390 400
CSEHHLLKGQ GVAGQAFLTN GPCFSSDVSN YKKSEYPLSH HANMYGLHGA
410 420 430 440 450
VAIRLRCIHT GSADFVLEFF LPKDCDDLEE QRKMLNALST IMAHVPRSLR
460 470 480 490 500
TVTDKELEEE SEVIEREEIV TPKIENASEL HGNSPWNASL EEIQRSNNTS
510 520 530 540 550
NPQNLGLVFD GGDKPNDGFG LKRGFDYTMD SNVNESSTFS SGGFSMMAEK
560 570 580 590 600
KRTKADKTIT LDVLRQYFAG SLKDAAKNIG VCPTTLKRIC RQHGIQRWPS
610 620 630 640 650
RKIKKVGHSL QKIQRVIDSV QGVSGPLPIG SFYANFPNLV SQSQEPSQQA
660 670 680 690 700
KTTPPPPPPV QLAKSPVSSY SHSSNSSQCC SSETQLNSGA TTDPPSTDVG
710 720 730 740 750
GALKKTSSEI ELQSSSLDET ILTLSSLENI PQGTNLLSSQ DDDFLRIKVS
760 770 780 790 800
YGEEKIRLRM RNSRRLRDLL WEIGKRFSIE DMSRYDLKYL DEDNEWVLLT
810 820 830 840
CDEDVEECVD VCRTTPSHTI KLLLQASSHH FPERSSATEY SLWH
Length:844
Mass (Da):94,232
Last modified:October 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i2336B5B8C535B73F
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC027665 Genomic DNA Translation: AAF79626.1
AC069251 Genomic DNA Translation: AAF80612.1
CP002684 Genomic DNA Translation: AEE29999.1
CP002684 Genomic DNA Translation: AEE30000.1
CP002684 Genomic DNA Translation: ANM60987.1
AY091015 mRNA Translation: AAM14037.1
AY117237 mRNA Translation: AAM51312.1

Protein sequence database of the Protein Information Resource

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PIRi
C86339

NCBI Reference Sequences

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RefSeqi
NP_001319052.1, NM_001332454.1
NP_173488.1, NM_101915.3
NP_973874.1, NM_202145.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G20640.1; AT1G20640.1; AT1G20640
AT1G20640.2; AT1G20640.2; AT1G20640
AT1G20640.3; AT1G20640.3; AT1G20640

Database of genes from NCBI RefSeq genomes

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GeneIDi
838653

Gramene; a comparative resource for plants

More...
Gramenei
AT1G20640.1; AT1G20640.1; AT1G20640
AT1G20640.2; AT1G20640.2; AT1G20640
AT1G20640.3; AT1G20640.3; AT1G20640

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G20640

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC027665 Genomic DNA Translation: AAF79626.1
AC069251 Genomic DNA Translation: AAF80612.1
CP002684 Genomic DNA Translation: AEE29999.1
CP002684 Genomic DNA Translation: AEE30000.1
CP002684 Genomic DNA Translation: ANM60987.1
AY091015 mRNA Translation: AAM14037.1
AY117237 mRNA Translation: AAM51312.1
PIRiC86339
RefSeqiNP_001319052.1, NM_001332454.1
NP_173488.1, NM_101915.3
NP_973874.1, NM_202145.1

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

BioGridi23892, 3 interactors
IntActiQ9LE38, 2 interactors
STRINGi3702.AT1G20640.1

Proteomic databases

PaxDbiQ9LE38

Genome annotation databases

EnsemblPlantsiAT1G20640.1; AT1G20640.1; AT1G20640
AT1G20640.2; AT1G20640.2; AT1G20640
AT1G20640.3; AT1G20640.3; AT1G20640
GeneIDi838653
GrameneiAT1G20640.1; AT1G20640.1; AT1G20640
AT1G20640.2; AT1G20640.2; AT1G20640
AT1G20640.3; AT1G20640.3; AT1G20640
KEGGiath:AT1G20640

Organism-specific databases

AraportiAT1G20640
TAIRilocus:2030397 AT1G20640

Phylogenomic databases

eggNOGiENOG410IE3G Eukaryota
ENOG41129QX LUCA
HOGENOMiCLU_008971_0_0_1
InParanoidiQ9LE38
OMAiACITHKL
OrthoDBi210841at2759
PhylomeDBiQ9LE38

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9LE38

Gene expression databases

ExpressionAtlasiQ9LE38 baseline and differential
GenevisibleiQ9LE38 AT

Family and domain databases

CDDicd06407 PB1_NLP, 1 hit
InterProiView protein in InterPro
IPR000270 PB1_dom
IPR034891 PB1_NLP
IPR003035 RWP-RK_dom
PfamiView protein in Pfam
PF00564 PB1, 1 hit
PF02042 RWP-RK, 1 hit
SMARTiView protein in SMART
SM00666 PB1, 1 hit
PROSITEiView protein in PROSITE
PS51745 PB1, 1 hit
PS51519 RWP_RK, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiNLP4_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9LE38
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 30, 2010
Last sequence update: October 1, 2000
Last modified: April 22, 2020
This is version 108 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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