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UniProtKB - Q9LDT8 (Q9LDT8_ORYSJ)

Entry version 158 (02 Dec 2020)
Sequence version 1 (01 Oct 2000)
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Protein

Receptor-like serine/threonine-protein kinase

Gene

Os01g0223900

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionKinase, Serine/threonine-protein kinaseUniRule annotationARBA annotation, Transferase
LigandATP-bindingUniRule annotationARBA annotation, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Receptor-like serine/threonine-protein kinaseUniRule annotation (EC:2.7.11.1UniRule annotation)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Os01g0223900Imported
ORF Names:OSNPB_010223900Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza sativa subsp. japonica (Rice)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri39947 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › Liliopsida › Poales › Poaceae › BOP clade › Oryzoideae › Oryzeae › Oryzinae › Oryza › Oryza sativa
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000059680 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei36 – 58HelicalSequence analysisAdd BLAST23
Transmembranei454 – 476HelicalSequence analysisAdd BLAST23

Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Keywords - PTMi

Disulfide bondARBA annotation

Proteomic databases

PRoteomics IDEntifications database

More...PRIDEi		Q9LDT8

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q9LDT8

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini61 – 190Bulb-type lectinInterPro annotationAdd BLAST130
Domaini360 – 441AppleInterPro annotationAdd BLAST82
Domaini507 – 780Protein kinaseInterPro annotationAdd BLAST274

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.UniRule annotation

Keywords - Domaini

EGF-like domainARBA annotation, Transmembrane, Transmembrane helixSequence analysisARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG502QUMK, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_000288_116_2_1

Identification of Orthologs from Complete Genome Data

More...OMAi		VGIHYFL

Database of Orthologous Groups

More...OrthoDBi		684563at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.90.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR001480, Bulb-type_lectin_dom
IPR036426, Bulb-type_lectin_dom_sf
IPR011009, Kinase-like_dom_sf
IPR003609, Pan_app
IPR000719, Prot_kinase_dom
IPR017441, Protein_kinase_ATP_BS
IPR000858, S_locus_glycoprot_dom
IPR008271, Ser/Thr_kinase_AS
IPR024171, SRK-like_kinase

Pfam protein domain database

More...Pfami		View protein in Pfam
PF01453, B_lectin, 1 hit
PF08276, PAN_2, 1 hit
PF00069, Pkinase, 1 hit
PF00954, S_locus_glycop, 1 hit

PIRSF; a whole-protein classification database

More...PIRSFi		PIRSF000641, SRK, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00108, B_lectin, 1 hit
SM00220, S_TKc, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF51110, SSF51110, 1 hit
SSF56112, SSF56112, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50927, BULB_LECTIN, 1 hit
PS50948, PAN, 1 hit
PS00107, PROTEIN_KINASE_ATP, 1 hit
PS50011, PROTEIN_KINASE_DOM, 1 hit
PS00108, PROTEIN_KINASE_ST, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9LDT8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MACSFLCKPW LPLTESAKPA RSPAPSSRAR TVVQQLAVLL LLLGGVGGGG 
        60         70         80         90        100
GALLAAAAST TDTILPGESI TGNQTLVSKN GEFELGFFNP GVGIHYFLGV 
       110        120        130        140        150
RLRKLAAYSP TFWIGDRVYV VDLPRAALEL FGDSLYIKED GASLWWSSPS 
       160        170        180        190        200
SSSSSSGGGR GGGAAVAVLL DTGDLVVRDQ RNSSLVLWRS FDYPGDALLP 
       210        220        230        240        250
GGRLGLDVAT GENVSLTFEG FTHNGSLRAD ASRRNGFVLT TDGRDTRGAF 
       260        270        280        290        300
PDWMVTTQDN GGSLVLNHPD ATNSTEFLQL KVGQVSLVRW SGADAGWVPR 
       310        320        330        340        350
WTFPSGCKSG GGFFCGDFGV CTTATGGECR CVDGFAPSDT KEWGLGYFVT 
       360        370        380        390        400
GCSRSLPLSC DANGQTEHGD SFAILDNLQG LPYNAQDEPA TTDEDCREAC 
       410        420        430        440        450
LNKCYCVAYS TETGCKLWYY DLYNLSSADK PPYSKIYVRL GSKLKSKRGL 
       460        470        480        490        500
ATRWMVLLVV GSVAVASAML AVLLLCRYRR DLFGSSKFVV EGSLVVYSYA 
       510        520        530        540        550
QIKKATENFS DKLGEGGFGS VFRGTLPGST TVVAVKNLKG LGYAEKQFRA 
       560        570        580        590        600
EVQTVGMIRH TNLVRLLGFC VKGNRKLLVY EYMPNGSLDA HIFSQKSSPL 
       610        620        630        640        650
SWQVRYQIAI GIARGLAYLH EECEHCIIHC DIKPENILLD EEFRPKIADF 
       660        670        680        690        700
GMAKLLGREF NAALTTIRGT RGYLAPEWLY GQPITKKADV YSFGIVLFEM 
       710        720        730        740        750
ISGIRSTVTM KFGSHRYYPS YAAAQMHEGD VLCLLDSRLE GNANVEELDI 
       760        770        780        790        800
TCRVACWCIQ DREGDRPSMG HVVRMLEGVV DTEMPPIPAS FQNLVDGDDS 
       810 
DIYEENWRLR TQD
Length:813
Mass (Da):88,508
Last modified:October 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i59EB64DA530189EC
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AK101712 mRNA Translation: BAG95199.1
AP014957 Genomic DNA Translation: BAS71096.1

NCBI Reference Sequences

More...RefSeqi		XP_015621846.1, XM_015766360.1

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		Os01t0223900-01; Os01t0223900-01; Os01g0223900

Database of genes from NCBI RefSeq genomes

More...GeneIDi		4326710

Gramene; a comparative resource for plants

More...Gramenei		Os01t0223900-01; Os01t0223900-01; Os01g0223900

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		osa:4326710

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK101712 mRNA Translation: BAG95199.1
AP014957 Genomic DNA Translation: BAS71096.1
RefSeqiXP_015621846.1, XM_015766360.1

3D structure databases

SMRiQ9LDT8
ModBaseiSearch...

Proteomic databases

PRIDEiQ9LDT8

Genome annotation databases

EnsemblPlantsiOs01t0223900-01; Os01t0223900-01; Os01g0223900
GeneIDi4326710
GrameneiOs01t0223900-01; Os01t0223900-01; Os01g0223900
KEGGiosa:4326710

Phylogenomic databases

eggNOGiENOG502QUMK, Eukaryota
HOGENOMiCLU_000288_116_2_1
OMAiVGIHYFL
OrthoDBi684563at2759

Family and domain databases

Gene3Di2.90.10.10, 1 hit
InterProiView protein in InterPro
IPR001480, Bulb-type_lectin_dom
IPR036426, Bulb-type_lectin_dom_sf
IPR011009, Kinase-like_dom_sf
IPR003609, Pan_app
IPR000719, Prot_kinase_dom
IPR017441, Protein_kinase_ATP_BS
IPR000858, S_locus_glycoprot_dom
IPR008271, Ser/Thr_kinase_AS
IPR024171, SRK-like_kinase
PfamiView protein in Pfam
PF01453, B_lectin, 1 hit
PF08276, PAN_2, 1 hit
PF00069, Pkinase, 1 hit
PF00954, S_locus_glycop, 1 hit
PIRSFiPIRSF000641, SRK, 1 hit
SMARTiView protein in SMART
SM00108, B_lectin, 1 hit
SM00220, S_TKc, 1 hit
SUPFAMiSSF51110, SSF51110, 1 hit
SSF56112, SSF56112, 1 hit
PROSITEiView protein in PROSITE
PS50927, BULB_LECTIN, 1 hit
PS50948, PAN, 1 hit
PS00107, PROTEIN_KINASE_ATP, 1 hit
PS50011, PROTEIN_KINASE_DOM, 1 hit
PS00108, PROTEIN_KINASE_ST, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9LDT8_ORYSJ
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9LDT8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: December 2, 2020
This is version 158 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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Main funding by: National Institutes of Health

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