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Protein

Transcription factor MYB102

Gene

MYB102

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001).1 Publication1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi37 – 61H-T-H motifPROSITE-ProRule annotationAdd BLAST25
DNA bindingi89 – 112H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processPlant defense, Stress response, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor MYB102Curated
Alternative name(s):
Myb-related protein 102Curated
Short name:
AtMYB1021 Publication
Myb-related protein M4Curated
Short name:
AtM41 Publication
Gene namesi
Name:MYB1021 Publication
Ordered Locus Names:At4g21440Imported
ORF Names:F18E5.60Imported, T6K22.170Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G21440
TAIRilocus:2141231 AT4G21440

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Disruption phenotypei

No visible phenotype under normal growth conditions, but mutant plant show increased susceptibility to the herbivore Pieris rapae (white cabbage butterfly) feeding.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004396561 – 350Transcription factor MYB102Add BLAST350

Proteomic databases

PaxDbiQ9LDR8

Expressioni

Tissue specificityi

Expressed in rosette leaves, cauline leaves and flowers.1 Publication

Inductioni

Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001).3 Publications

Gene expression databases

ExpressionAtlasiQ9LDR8 baseline and differential

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi3702.AT4G21440.1

Structurei

3D structure databases

ProteinModelPortaliQ9LDR8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 65HTH myb-type 1PROSITE-ProRule annotationAdd BLAST57
Domaini66 – 116HTH myb-type 2PROSITE-ProRule annotationAdd BLAST51

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi259 – 322Ser-richPROSITE-ProRule annotationAdd BLAST64

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
HOGENOMiHOG000237600
InParanoidiQ9LDR8
KOiK09422
OMAiHDSSTHE
OrthoDBiEOG09360IGF
PhylomeDBiQ9LDR8

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits

Sequencei

Sequence statusi: Complete.

Q9LDR8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MARSPCCEKN GLKKGPWTSE EDQKLVDYIQ KHGYGNWRTL PKNAGLQRCG
60 70 80 90 100
KSCRLRWTNY LRPDIKRGRF SFEEEETIIQ LHSFLGNKWS AIAARLPGRT
110 120 130 140 150
DNEIKNFWNT HIRKKLLRMG IDPVTHSPRL DLLDISSILA SSLYNSSSHH
160 170 180 190 200
MNMSRLMMDT NRRHHQQHPL VNPEILKLAT SLFSQNQNQN LVVDHDSRTQ
210 220 230 240 250
EKQTVYSQTG VNQYQTNQYF ENTITQELQS SMPPFPNEAR QFNNMDHHFN
260 270 280 290 300
GFGEQNLVST STTSVQDCYN PSFNDYSSSN FVLDPSYSDQ SFNFANSVLN
310 320 330 340 350
TPSSSPSPTT LNSSYINSSS CSTEDEIESY CSNLMKFDIP DFLDVNGFII
Length:350
Mass (Da):40,167
Last modified:October 1, 2000 - v1
Checksum:i63D8508DAC1E636E
GO

Sequence cautioni

The sequence CAA18708 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAA20209 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB81251 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti19S → F in AAL32697 (PubMed:14593172).Curated1
Sequence conflicti217N → D in AAM64808 (Ref. 6) Curated1
Sequence conflicti240R → H in AAM64808 (Ref. 6) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X90381 Genomic DNA Translation: CAB77384.1
X90382 mRNA Translation: CAB81661.1
AY519607 mRNA Translation: AAS10077.1
AL022603 Genomic DNA Translation: CAA18708.1 Sequence problems.
AL031187 Genomic DNA Translation: CAA20209.1 Sequence problems.
AL161555 Genomic DNA Translation: CAB81251.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE84451.1
AY062619 mRNA Translation: AAL32697.1
BT001235 mRNA Translation: AAN65122.1
AY087252 mRNA Translation: AAM64808.1
PIRiT05152 S58293
RefSeqiNP_567626.1, NM_118264.3
UniGeneiAt.2261

Genome annotation databases

EnsemblPlantsiAT4G21440.1; AT4G21440.1; AT4G21440
GeneIDi826916
GrameneiAT4G21440.1; AT4G21440.1; AT4G21440
KEGGiath:AT4G21440

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X90381 Genomic DNA Translation: CAB77384.1
X90382 mRNA Translation: CAB81661.1
AY519607 mRNA Translation: AAS10077.1
AL022603 Genomic DNA Translation: CAA18708.1 Sequence problems.
AL031187 Genomic DNA Translation: CAA20209.1 Sequence problems.
AL161555 Genomic DNA Translation: CAB81251.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE84451.1
AY062619 mRNA Translation: AAL32697.1
BT001235 mRNA Translation: AAN65122.1
AY087252 mRNA Translation: AAM64808.1
PIRiT05152 S58293
RefSeqiNP_567626.1, NM_118264.3
UniGeneiAt.2261

3D structure databases

ProteinModelPortaliQ9LDR8
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G21440.1

Proteomic databases

PaxDbiQ9LDR8

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G21440.1; AT4G21440.1; AT4G21440
GeneIDi826916
GrameneiAT4G21440.1; AT4G21440.1; AT4G21440
KEGGiath:AT4G21440

Organism-specific databases

AraportiAT4G21440
TAIRilocus:2141231 AT4G21440

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
HOGENOMiHOG000237600
InParanoidiQ9LDR8
KOiK09422
OMAiHDSSTHE
OrthoDBiEOG09360IGF
PhylomeDBiQ9LDR8

Miscellaneous databases

PROiPR:Q9LDR8

Gene expression databases

ExpressionAtlasiQ9LDR8 baseline and differential

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiMY102_ARATH
AccessioniPrimary (citable) accession number: Q9LDR8
Secondary accession number(s): O65409, Q8LBF0, Q8W4E0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 12, 2017
Last sequence update: October 1, 2000
Last modified: October 10, 2018
This is version 152 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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