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Entry version 113 (11 Dec 2019)
Sequence version 1 (01 Oct 2000)
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Protein

Flagellar biosynthesis protein FlhA

Gene

flhA

Organism
Xanthomonas oryzae pv. oryzae
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin.UniRule annotation

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processBacterial flagellum biogenesisUniRule annotation, Bacterial flagellum protein exportUniRule annotation, Protein transport, Transport

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
GCF_001746595:G1F73-2685-MONOMER
GCF_001746615:G1F78-1772-MONOMER
GCF_001746635:G1F75-2176-MONOMER
GCF_001746675:G1F77-2753-MONOMER
GCF_001746695:G1F7B-2735-MONOMER
GCF_001746715:G1F79-2678-MONOMER
GCF_001746735:G1F7A-2702-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Flagellar biosynthesis protein FlhAUniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:flhAUniRule annotationImported
ORF Names:BCR61_11215Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiXanthomonas oryzae pv. oryzaeImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri64187 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000258126 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei21 – 40HelicalUniRule annotationAdd BLAST20
Transmembranei46 – 64HelicalUniRule annotationAdd BLAST19
Transmembranei76 – 96HelicalUniRule annotationAdd BLAST21
Transmembranei116 – 139HelicalUniRule annotationAdd BLAST24
Transmembranei208 – 230HelicalUniRule annotationAdd BLAST23
Transmembranei250 – 267HelicalUniRule annotationAdd BLAST18
Transmembranei288 – 304HelicalUniRule annotationAdd BLAST17

GO - Cellular componenti

Keywords - Cellular componenti

Cell membraneUniRule annotation, Cell projection, Cilium, FlagellumImported, Membrane

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili177 – 197Sequence analysisAdd BLAST21

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixUniRule annotation

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.490.80, 1 hit
1.10.8.540, 1 hit
3.40.30.60, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR042194 FHIPEP_1
IPR042193 FHIPEP_3
IPR042196 FHIPEP_4
IPR006301 FlhA
IPR001712 T3SS_FHIPEP

The PANTHER Classification System

More...
PANTHERi
PTHR30161 PTHR30161, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00771 FHIPEP, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF005419 FlhA, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00949 TYPE3IMAPROT

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR01398 FlhA, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9L777-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSAQPAPMNA RRVMELLRNG LGAPLALMAM LAMLMVPLAA PVLDALFTFN
60 70 80 90 100
IAISLMVLLA VVYVQRPLEF TIFPIVLLMT TMLRLALNVA SSRVILINGQ
110 120 130 140 150
DGHAAAGKVI EAFGQFVIGG NYAVGIVVFA ILTIINFVVI TKGAGRVSEV
160 170 180 190 200
TARFILDAMP GKQMAIDADL NAGLLTREEA KARREEVREE ADFYGAMDGA
210 220 230 240 250
NKFIRGDAIA AIMILFINLV GGMAVGMLQH GMSFMDAAST YTLLSIGDGL
260 270 280 290 300
VAQLPALLVS SSVALLVTRA SRAQDMRGAM VSQVFGQHRA LAVAAAILGL
310 320 330 340 350
VGLVPGMPNV AFLTLGLILG VIAWKMYKRS LVVAPTGAPA TDPKAAAAAT
360 370 380 390 400
AAQASAELSW DELRPIDPLG LEVGYRLIPL VDKNQGGELM ARIKGVRRKL
410 420 430 440 450
TQDIGFLVPP VHIRDNLELS ANAYRLLVHG VPVATAEIYS DRELALDPGG
460 470 480 490 500
ALGQLDGIPG KDPAFGLDAT WIQPHQRAYA ESMGYTVVDP ATVVATHLSH
510 520 530 540 550
LIREHAPELL GHEEVQQLLA TLAKTAPKMV EDLTPKALPL SVVVRVLQNL
560 570 580 590 600
LIEKIPVRQL RKIVEALVEH APHSQDPATL TAAVRTSLGR FIVQEIAGMS
610 620 630 640 650
AELPVFTLAP QLERVLQEST HGNGVALEPG LAERLHQSLA ECVGKQEARN
660 670 680 690
EPAVVLVPGQ VRAALARLVR HSVPSLSVLA YSEVPEDKRL KLVGTIS
Length:697
Mass (Da):74,359
Last modified:October 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i113A0D728876588A
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF226282 Genomic DNA Translation: AAF33829.1
CP019226 Genomic DNA Translation: AXQ09248.1

NCBI Reference Sequences

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RefSeqi
WP_011259246.1, NZ_QTKH01000531.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ALZ72078; ALZ72078; APZ20_11835

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF226282 Genomic DNA Translation: AAF33829.1
CP019226 Genomic DNA Translation: AXQ09248.1
RefSeqiWP_011259246.1, NZ_QTKH01000531.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiALZ72078; ALZ72078; APZ20_11835

Enzyme and pathway databases

BioCyciGCF_001746595:G1F73-2685-MONOMER
GCF_001746615:G1F78-1772-MONOMER
GCF_001746635:G1F75-2176-MONOMER
GCF_001746675:G1F77-2753-MONOMER
GCF_001746695:G1F7B-2735-MONOMER
GCF_001746715:G1F79-2678-MONOMER
GCF_001746735:G1F7A-2702-MONOMER

Family and domain databases

Gene3Di1.10.490.80, 1 hit
1.10.8.540, 1 hit
3.40.30.60, 1 hit
InterProiView protein in InterPro
IPR042194 FHIPEP_1
IPR042193 FHIPEP_3
IPR042196 FHIPEP_4
IPR006301 FlhA
IPR001712 T3SS_FHIPEP
PANTHERiPTHR30161 PTHR30161, 1 hit
PfamiView protein in Pfam
PF00771 FHIPEP, 1 hit
PIRSFiPIRSF005419 FlhA, 1 hit
PRINTSiPR00949 TYPE3IMAPROT
TIGRFAMsiTIGR01398 FlhA, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9L777_XANOO
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9L777
Secondary accession number(s): Q5GZJ9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: December 11, 2019
This is version 113 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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