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Protein
Submitted name:

Glucocorticoid-attenuated response gene 16 product

Gene

Ifit1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: GO_Central

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Glucocorticoid-attenuated response gene 16 productImported
Gene namesi
Name:Ifit1Imported
Synonyms:garg16Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi620599 Ifit1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

PTM databases

PhosphoSitePlusiQ9JJT1

Expressioni

Gene expression databases

GenevisibleiQ9JJT1 RN

Structurei

3D structure databases

ProteinModelPortaliQ9JJT1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini136 – 275TPR_REGIONInterPro annotationAdd BLAST140
Repeati138 – 171TPRPROSITE-ProRule annotationAdd BLAST34
Repeati174 – 207TPRPROSITE-ProRule annotationAdd BLAST34
Repeati242 – 275TPRPROSITE-ProRule annotationAdd BLAST34
Domaini313 – 401TPR_REGIONInterPro annotationAdd BLAST89
Repeati329 – 362TPRPROSITE-ProRule annotationAdd BLAST34
Domaini426 – 459TPR_REGIONInterPro annotationAdd BLAST34
Repeati426 – 459TPRPROSITE-ProRule annotationAdd BLAST34

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili61 – 81Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis, TPR repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1124 Eukaryota
COG0457 LUCA
HOGENOMiHOG000001558
HOVERGENiHBG066330
KOiK14217
PhylomeDBiQ9JJT1

Family and domain databases

Gene3Di1.25.40.10, 3 hits
InterProiView protein in InterPro
IPR013026 TPR-contain_dom
IPR011990 TPR-like_helical_dom_sf
IPR019734 TPR_repeat
SMARTiView protein in SMART
SM00028 TPR, 6 hits
SUPFAMiSSF48452 SSF48452, 3 hits
PROSITEiView protein in PROSITE
PS50005 TPR, 5 hits
PS50293 TPR_REGION, 3 hits

Sequencei

Sequence statusi: Complete.

Q9JJT1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGENAGGDQV MENLLQLRCH FTWGLLFEKN DIPDLEVRIS EQVQFLDIKN
60 70 80 90 100
SLGMHNLQAY VRHLKGEQEE ALQSLKEAEA LIEGEQLGKR SLVTWGNCAW
110 120 130 140 150
VHYHRGSLAE AQIYLDKVEN VCREFSSPFR YRMECAEIDC EEGWALLKCG
160 170 180 190 200
GSNYMRAMAC FAKALQVDPE NPEYNAGYAV VAYRQDFDDN HVSLEPLRKA
210 220 230 240 250
VRLNPEDPHL KVLLALKLQD LGEQDEAETH IEEALSSTSC QSYVFRYAAK
260 270 280 290 300
YFRRKGDINE ALHLLHRALQ TSPSSGYLHY QKGLCYKQQM IQLKTSGNRQ
310 320 330 340 350
ARRQENIQEL AHQAICEFQE TLNLRPTFEM AYVCMAEMQA EIGQYEEAEG
360 370 380 390 400
NFQEALNLNN LVAHIEQDIH FRYGRSQQFH KKSEDKAITH YLKGLKLEEK
410 420 430 440 450
SFAWRKLLTA LEKVAERRVR QNVRLVESTS LLGLVFKLKG QEMKALLYYE
460
KALRLSGEMN PAF
Length:463
Mass (Da):53,413
Last modified:October 1, 2000 - v1
Checksum:iE058BCE2BC256728
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ276893 mRNA Translation: CAB82773.1
RefSeqiNP_064481.1, NM_020096.1
UniGeneiRn.48677

Genome annotation databases

GeneIDi56824
KEGGirno:56824
UCSCiRGD:620599 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ276893 mRNA Translation: CAB82773.1
RefSeqiNP_064481.1, NM_020096.1
UniGeneiRn.48677

3D structure databases

ProteinModelPortaliQ9JJT1
ModBaseiSearch...
MobiDBiSearch...

PTM databases

PhosphoSitePlusiQ9JJT1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi56824
KEGGirno:56824
UCSCiRGD:620599 rat

Organism-specific databases

CTDi3434
RGDi620599 Ifit1

Phylogenomic databases

eggNOGiKOG1124 Eukaryota
COG0457 LUCA
HOGENOMiHOG000001558
HOVERGENiHBG066330
KOiK14217
PhylomeDBiQ9JJT1

Gene expression databases

GenevisibleiQ9JJT1 RN

Family and domain databases

Gene3Di1.25.40.10, 3 hits
InterProiView protein in InterPro
IPR013026 TPR-contain_dom
IPR011990 TPR-like_helical_dom_sf
IPR019734 TPR_repeat
SMARTiView protein in SMART
SM00028 TPR, 6 hits
SUPFAMiSSF48452 SSF48452, 3 hits
PROSITEiView protein in PROSITE
PS50005 TPR, 5 hits
PS50293 TPR_REGION, 3 hits
ProtoNetiSearch...

Entry informationi

Entry nameiQ9JJT1_RAT
AccessioniPrimary (citable) accession number: Q9JJT1
Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: November 7, 2018
This is version 99 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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