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Protein

60S ribosomal protein L38

Gene

Rpl38

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • 90S preribosome assembly Source: MGI
  • axial mesoderm development Source: MGI
  • cytoplasmic translation Source: MGI
  • middle ear morphogenesis Source: MGI
  • ossification Source: MGI
  • regulation of translation Source: MGI
  • sensory perception of sound Source: MGI
  • skeletal system development Source: MGI

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-MMU-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L38
Gene namesi
Name:Rpl38
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 11

Organism-specific databases

MGIiMGI:1914921 Rpl38

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002154361 – 7060S ribosomal protein L38Add BLAST70

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Cross-linki4Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residuei9N6-acetyllysine; alternateBy similarity1
Cross-linki9Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternateBy similarity
Modified residuei67N6-acetyllysineBy similarity1

Keywords - PTMi

Acetylation, Isopeptide bond, Ubl conjugation

Proteomic databases

EPDiQ9JJI8
MaxQBiQ9JJI8
PaxDbiQ9JJI8
PRIDEiQ9JJI8
TopDownProteomicsiQ9JJI8

PTM databases

iPTMnetiQ9JJI8
PhosphoSitePlusiQ9JJI8

Expressioni

Gene expression databases

BgeeiENSMUSG00000057322 Expressed in 21 organ(s), highest expression level in spleen
CleanExiMM_RPL38
ExpressionAtlasiQ9JJI8 baseline and differential
GenevisibleiQ9JJI8 MM

Interactioni

Protein-protein interaction databases

BioGridi212354, 3 interactors
IntActiQ9JJI8, 8 interactors
MINTiQ9JJI8
STRINGi10090.ENSMUSP00000080741

Structurei

3D structure databases

ProteinModelPortaliQ9JJI8
SMRiQ9JJI8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3499 Eukaryota
ENOG4112229 LUCA
GeneTreeiENSGT00390000003718
HOGENOMiHOG000188979
HOVERGENiHBG001013
InParanoidiQ9JJI8
KOiK02923
OMAiRDIKQFI
OrthoDBiEOG091G0SPL
PhylomeDBiQ9JJI8
TreeFamiTF300215

Family and domain databases

Gene3Di3.30.720.90, 1 hit
InterProiView protein in InterPro
IPR002675 Ribosomal_L38e
IPR038464 Ribosomal_L38e_sf
PANTHERiPTHR10965 PTHR10965, 1 hit
PfamiView protein in Pfam
PF01781 Ribosomal_L38e, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD010361 Ribosomal_L38e, 1 hit

Sequencei

Sequence statusi: Complete.

Q9JJI8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPRKIEEIKD FLLTARRKDA KSVKIKKNKD NVKFKVRCSR YLYTLVITDK
60 70
EKAEKLKQSL PPGLAVKDLK
Length:70
Mass (Da):8,204
Last modified:January 23, 2007 - v3
Checksum:iFDD9A0B7BC98DBBA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB037665 mRNA Translation: BAB03500.1
AK002659 mRNA Translation: BAB22266.1
AK010277 mRNA Translation: BAB26814.1
AK010518 mRNA Translation: BAB27000.1
AK012391 mRNA Translation: BAB28208.1
BC055346 mRNA Translation: AAH55346.1
CCDSiCCDS36365.1
RefSeqiNP_001041522.1, NM_001048057.1
NP_001041523.1, NM_001048058.1
NP_075861.1, NM_023372.2
XP_006534072.1, XM_006534009.2
XP_017170209.1, XM_017314720.1
UniGeneiMm.238817
Mm.371629

Genome annotation databases

EnsembliENSMUST00000077915; ENSMUSP00000102211; ENSMUSG00000057322
ENSMUST00000082092; ENSMUSP00000080741; ENSMUSG00000057322
ENSMUST00000106599; ENSMUSP00000102209; ENSMUSG00000057322
ENSMUST00000106602; ENSMUSP00000102213; ENSMUSG00000057322
GeneIDi67671
KEGGimmu:67671
UCSCiuc007mfk.1 mouse

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB037665 mRNA Translation: BAB03500.1
AK002659 mRNA Translation: BAB22266.1
AK010277 mRNA Translation: BAB26814.1
AK010518 mRNA Translation: BAB27000.1
AK012391 mRNA Translation: BAB28208.1
BC055346 mRNA Translation: AAH55346.1
CCDSiCCDS36365.1
RefSeqiNP_001041522.1, NM_001048057.1
NP_001041523.1, NM_001048058.1
NP_075861.1, NM_023372.2
XP_006534072.1, XM_006534009.2
XP_017170209.1, XM_017314720.1
UniGeneiMm.238817
Mm.371629

3D structure databases

ProteinModelPortaliQ9JJI8
SMRiQ9JJI8
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi212354, 3 interactors
IntActiQ9JJI8, 8 interactors
MINTiQ9JJI8
STRINGi10090.ENSMUSP00000080741

PTM databases

iPTMnetiQ9JJI8
PhosphoSitePlusiQ9JJI8

Proteomic databases

EPDiQ9JJI8
MaxQBiQ9JJI8
PaxDbiQ9JJI8
PRIDEiQ9JJI8
TopDownProteomicsiQ9JJI8

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000077915; ENSMUSP00000102211; ENSMUSG00000057322
ENSMUST00000082092; ENSMUSP00000080741; ENSMUSG00000057322
ENSMUST00000106599; ENSMUSP00000102209; ENSMUSG00000057322
ENSMUST00000106602; ENSMUSP00000102213; ENSMUSG00000057322
GeneIDi67671
KEGGimmu:67671
UCSCiuc007mfk.1 mouse

Organism-specific databases

CTDi6169
MGIiMGI:1914921 Rpl38

Phylogenomic databases

eggNOGiKOG3499 Eukaryota
ENOG4112229 LUCA
GeneTreeiENSGT00390000003718
HOGENOMiHOG000188979
HOVERGENiHBG001013
InParanoidiQ9JJI8
KOiK02923
OMAiRDIKQFI
OrthoDBiEOG091G0SPL
PhylomeDBiQ9JJI8
TreeFamiTF300215

Enzyme and pathway databases

ReactomeiR-MMU-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Miscellaneous databases

ChiTaRSiRpl38 mouse
PROiPR:Q9JJI8
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000057322 Expressed in 21 organ(s), highest expression level in spleen
CleanExiMM_RPL38
ExpressionAtlasiQ9JJI8 baseline and differential
GenevisibleiQ9JJI8 MM

Family and domain databases

Gene3Di3.30.720.90, 1 hit
InterProiView protein in InterPro
IPR002675 Ribosomal_L38e
IPR038464 Ribosomal_L38e_sf
PANTHERiPTHR10965 PTHR10965, 1 hit
PfamiView protein in Pfam
PF01781 Ribosomal_L38e, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD010361 Ribosomal_L38e, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRL38_MOUSE
AccessioniPrimary (citable) accession number: Q9JJI8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 26, 2002
Last sequence update: January 23, 2007
Last modified: October 10, 2018
This is version 137 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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