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UniProtKB - Q9JIR0 (RIMB1_RAT)

Entry version 115 (13 Nov 2019)
Sequence version 2 (16 Jan 2004)
Previous versions | rss
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Protein

Peripheral-type benzodiazepine receptor-associated protein 1

Gene

Tspoap1

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...Reactomei		R-RNO-181429 Serotonin Neurotransmitter Release Cycle
R-RNO-181430 Norepinephrine Neurotransmitter Release Cycle
R-RNO-196108 Pregnenolone biosynthesis
R-RNO-210500 Glutamate Neurotransmitter Release Cycle
R-RNO-212676 Dopamine Neurotransmitter Release Cycle
R-RNO-264642 Acetylcholine Neurotransmitter Release Cycle

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Peripheral-type benzodiazepine receptor-associated protein 1
Short name:
PRAX-1
Alternative name(s):
RIMS-binding protein 1
Short name:
RIM-BP1
TSPO-associated protein 1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Tspoap1Imported
Synonyms:Bzrap1, Rbp1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiRattus norvegicus (Rat)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10116 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002494 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unplaced

Organism-specific databases

Rat genome database

More...RGDi		708563 Tspoap1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Cytoplasm

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002213821 – 1847Peripheral-type benzodiazepine receptor-associated protein 1Add BLAST1847

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q9JIR0

PRoteomics IDEntifications database

More...PRIDEi		Q9JIR0

PTM databases

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...PhosphoSitePlusi		Q9JIR0

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Specifically expressed in brain. High expression level in the limbic system such as the nucleus accumbens, septum, and hippocampus, as well as on the cerebellum and pineal gland. Abundant in the CA1 region of the hippocampus.3 Publications

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with TSPO (By similarity).

Interacts with RIMS1 and RIMS2.

By similarity1 Publication

GO - Molecular functioni

Complete GO annotation on QuickGO ...

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		10116.ENSRNOP00000010755

Chemistry databases

BindingDB database of measured binding affinities

More...BindingDBi		Q9JIR0

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q9JIR0

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini651 – 718SH3 1PROSITE-ProRule annotationAdd BLAST68
Domaini789 – 880Fibronectin type-III 1PROSITE-ProRule annotationAdd BLAST92
Domaini882 – 974Fibronectin type-III 2PROSITE-ProRule annotationAdd BLAST93
Domaini979 – 1077Fibronectin type-III 3PROSITE-ProRule annotationAdd BLAST99
Domaini1617 – 1685SH3 2PROSITE-ProRule annotationAdd BLAST69
Domaini1756 – 1823SH3 3PROSITE-ProRule annotationAdd BLAST68

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1256 – 1266Poly-GluAdd BLAST11
Compositional biasi1326 – 1335Poly-Glu10

<p>This subsection of the ‘Family and domains’ section provides general information on the biological role of a domain. The term ‘domain’ is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

The second SH3 domain mediates binding to a proline-rich motif in RIMS1 and RIMS2.

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the RIMBP family.Curated

Keywords - Domaini

Repeat, SH3 domain

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG3632 Eukaryota
ENOG410XZ8W LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000139176

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		Q9JIR0

Database for complete collections of gene phylogenies

More...PhylomeDBi		Q9JIR0

Family and domain databases

Conserved Domains Database

More...CDDi		cd00063 FN3, 1 hit
cd12012 SH3_RIM-BP_2, 1 hit
cd12013 SH3_RIM-BP_3, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.60.40.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR003961 FN3_dom
IPR036116 FN3_sf
IPR013783 Ig-like_fold
IPR035753 RIM-BP_SH3_2
IPR035755 RIM-BP_SH3_3
IPR040325 RIMBP1/2/3
IPR036028 SH3-like_dom_sf
IPR001452 SH3_domain

The PANTHER Classification System

More...PANTHERi		PTHR14234 PTHR14234, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF07653 SH3_2, 2 hits
PF14604 SH3_9, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00060 FN3, 3 hits
SM00326 SH3, 3 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF49265 SSF49265, 1 hit
SSF50044 SSF50044, 3 hits

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50853 FN3, 3 hits
PS50002 SH3, 3 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All

Isoform 1 (identifier: Q9JIR0-1) [UniParc]FASTAAdd to basket
Also known as: Rbp1A, RIM binding protein 1A

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MEQLTTLPRL GDPGAMEPWA LPAWQHWTQG QGCKPGDASA SIAATPTALQ 
        60         70         80         90        100
VKGLRFEESS EPAGAHSPGP IRNTDPEGTE TVLPKLGQQA ESPGYSCSRL 
       110        120        130        140        150
EGEDAQAYKA KFNIGFGDRP NLELLRALGE LQQHCTILKE ENQMLRKSSF 
       160        170        180        190        200
PETEEKVRRL KRKNAELAVI AKRLEERAQK LQETNMRGGE VPLCPDPDPV 
       210        220        230        240        250
WSCARKALAR QRARDLSETA TALLAKDKQN AALQRECREL QARLSLVGKE 
       260        270        280        290        300
GPQWLHMRDF DRLLRESQRE VLRLQRQIAL RNQREPLRPA RSQGSTAPSS 
       310        320        330        340        350
VGAPAPGAPG ETVLEDDVES PQVVLGEPEK QLRVQQLESE LCKKRKKCES 
       360        370        380        390        400
LEQEARKKQR RCEELELQLR AAQNENARLV EENSRLSGKA TEKEQVEWEN 
       410        420        430        440        450
AELKGQLLGV TQERDSALRK SQGLQSKLES LEQVLEHMRK VAQRRQQLEE 
       460        470        480        490        500
EHEQARLSLQ EKQEEVRRLQ QAQAEAKREH EGAVQLLEST LDSMQARVRE 
       510        520        530        540        550
LEGQCRSQTE RFSLLAQELQ AFRLHPGPLD LLTSALGCNA LGDHPPPHCC 
       560        570        580        590        600
CSSPQPCQGS GPKDLDLPPG SPGRCTPKSS EPALATLTGV PRRTAKKAES 
       610        620        630        640        650
LSNSSRSESI HNSPKSCPTP EVDTASEVEE LEVDSVSLLP AAPEGHSGGG 
       660        670        680        690        700
ARIQVFLARY SYNPFEGPNE NPEAELPLTA GEYIYIYGNM DEDGFFEGEL 
       710        720        730        740        750
MDGRRGLVPS NFVERVSDDD LLSTLPRELA DSSHSSGPEL SFLSGGGGGC 
       760        770        780        790        800
SSGGQSSGGR SQPRPEEEAT GDELSLSPPP EGLGEPLAVP YPRHITVLKQ 
       810        820        830        840        850
LAHSVVLAWE LPPERVDLRG FHIFVNGELR QALGPGVPPK AVLENMDLRA 
       860        870        880        890        900
GPLHVSVQAL TSKGSSDPLR CCLAMGAGAG VVPSQLRIHR LTATSAEITW 
       910        920        930        940        950
VPGNSNLAHA VYLNGEECPP ARPSTYWATF CNLRPGTLYQ ARVEAQIPSQ 
       960        970        980        990       1000
GPWEPGWERP ELRAATLQFT TLPAGLPDAP LDVQAEPGPS PGIVMISWLP 
      1010       1020       1030       1040       1050
VTIDAAGTSN GVRVTGYAVY ADGQKIMEVA SPTAGSVLVE VSQLQLLQAC 
      1060       1070       1080       1090       1100
HEVTVRTMSP HGESTDSIPA PVAPALASAC QPARMSCLSP RPSPEVRTPL 
      1110       1120       1130       1140       1150
ASVSPGLGYT SLPLRHPVPH GTQDSPASLS TEMSKGPQEE PPVPCSQEEA 
      1160       1170       1180       1190       1200
GSAVHRTSEE KRAMEPTLGQ EGPDPVAPFL AKQAVECTSG DAGPTPCSTQ 
      1210       1220       1230       1240       1250
EELTQKEPST EVCHRGDLDS ELKLRSEKEG MSELGVHLVN SLVDHSRNSD 
      1260       1270       1280       1290       1300
LSDIQEEEEE EEEEEELGSR PWSFQKQVAG NSIGENGAKP QPDPSCETDS 
      1310       1320       1330       1340       1350
DEEILEQILE LPLQRLCSKK LFSIPEEEEE EDEEEGLGKP GPSSSSQDPS 
      1360       1370       1380       1390       1400
QPERALLGLD CESSQPQGPG LCPLSPELSG AREHLEDVLG VVGGNSRRRG 
      1410       1420       1430       1440       1450
GCSPEKLPNR KRPQDPREHC SRLLGNGGPQ TSARPVPPRD RGSLPVIEGT 
      1460       1470       1480       1490       1500
RVGQEPGGRG RPGLSRRCPR GPAPESSLVS CLSPKCLEIS IEYDSEDEQE 
      1510       1520       1530       1540       1550
VGSGGVSISS SCYPTDGEAW GTAAVGRPRG PVKVNSGSNT YLRLPAWEKG 
      1560       1570       1580       1590       1600
EPERRGRSAI GRTKEPPSRA TETGESRGQD NSGRRGPQRR GARVLRTGTT 
      1610       1620       1630       1640       1650
ELAPPRSPQE APSHQDLPLR VFVALFDYDP ISMSPNPDAG EEELPFREGQ 
      1660       1670       1680       1690       1700
ILKVFGDKDA DGFYRGESGG RTGYIPCNMV AEVAVDTPTG RQQLLQRGFL 
      1710       1720       1730       1740       1750
PPNVLTQGSG NGPSVYPSAH TPGPPPKPRR SKKVELEDPA QLCPGPPKLI 
      1760       1770       1780       1790       1800
HSAALKTSRP MVAAFDYNPR ENSPNMDVEA ELPFRAGDVI TVFGNMDDDG 
      1810       1820       1830       1840 
FYYGELNGQR GLVPSNFLEG PGPEAGGLDS GTSQAESQRT RRRRVQC
Note: No experimental confirmation available.
Length:1,847
Mass (Da):200,204
Last modified:January 16, 2004 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC634B74E52736B9D
GO
Isoform 2 (identifier: Q9JIR0-2) [UniParc]FASTAAdd to basket
Also known as: Rbp1B, RIM binding protein 1B

The sequence of this isoform differs from the canonical sequence as follows:
     1063-1121: Missing.

Note: No experimental confirmation available.
Show »
Length:1,788
Mass (Da):194,193
Checksum:i0F10B376A145B9B4
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F1LPI6F1LPI6_RAT
Peripheral-type benzodiazepine rece...
Tspoap1
1,845Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0092111063 – 1121Missing in isoform 2. 1 PublicationAdd BLAST59

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AABR03073157 Genomic DNA No translation available.
AF199337 mRNA Translation: AAF81659.1
AF199338 mRNA Translation: AAF81660.1

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR03073157 Genomic DNA No translation available.
AF199337 mRNA Translation: AAF81659.1
AF199338 mRNA Translation: AAF81660.1

3D structure databases

SMRiQ9JIR0
ModBaseiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000010755

Chemistry databases

BindingDBiQ9JIR0

PTM databases

PhosphoSitePlusiQ9JIR0

Proteomic databases

PaxDbiQ9JIR0
PRIDEiQ9JIR0

Organism-specific databases

RGDi708563 Tspoap1

Phylogenomic databases

eggNOGiKOG3632 Eukaryota
ENOG410XZ8W LUCA
HOGENOMiHOG000139176
InParanoidiQ9JIR0
PhylomeDBiQ9JIR0

Enzyme and pathway databases

ReactomeiR-RNO-181429 Serotonin Neurotransmitter Release Cycle
R-RNO-181430 Norepinephrine Neurotransmitter Release Cycle
R-RNO-196108 Pregnenolone biosynthesis
R-RNO-210500 Glutamate Neurotransmitter Release Cycle
R-RNO-212676 Dopamine Neurotransmitter Release Cycle
R-RNO-264642 Acetylcholine Neurotransmitter Release Cycle

Miscellaneous databases

Protein Ontology

More...PROi		PR:Q9JIR0

Family and domain databases

CDDicd00063 FN3, 1 hit
cd12012 SH3_RIM-BP_2, 1 hit
cd12013 SH3_RIM-BP_3, 1 hit
Gene3Di2.60.40.10, 1 hit
InterProiView protein in InterPro
IPR003961 FN3_dom
IPR036116 FN3_sf
IPR013783 Ig-like_fold
IPR035753 RIM-BP_SH3_2
IPR035755 RIM-BP_SH3_3
IPR040325 RIMBP1/2/3
IPR036028 SH3-like_dom_sf
IPR001452 SH3_domain
PANTHERiPTHR14234 PTHR14234, 1 hit
PfamiView protein in Pfam
PF07653 SH3_2, 2 hits
PF14604 SH3_9, 1 hit
SMARTiView protein in SMART
SM00060 FN3, 3 hits
SM00326 SH3, 3 hits
SUPFAMiSSF49265 SSF49265, 1 hit
SSF50044 SSF50044, 3 hits
PROSITEiView protein in PROSITE
PS50853 FN3, 3 hits
PS50002 SH3, 3 hits

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRIMB1_RAT
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9JIR0
Secondary accession number(s): Q9JIQ9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 16, 2004
Last sequence update: January 16, 2004
Last modified: November 13, 2019
This is version 115 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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