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UniProtKB - Q9I1B8 (Q9I1B8_PSEAE)

Entry version 82 (02 Dec 2020)
Sequence version 1 (01 Mar 2001)
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Protein

IcmF-related_N domain-containing protein

Gene

PA2361

Organism
Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		PAER208964:G1FZ6-2400-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
IcmF-related_N domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:PA2361Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri208964 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002438 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

Organism-specific databases

Pseudomonas genome database

More...PseudoCAPi		PA2361

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei6 – 27HelicalSequence analysisAdd BLAST22
Transmembranei349 – 368HelicalSequence analysisAdd BLAST20

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Miscellaneous databases

Pathogen-Host Interaction database

More...PHI-basei		PHI:5263

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q9I1B8

PRoteomics IDEntifications database

More...PRIDEi		Q9I1B8

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini115 – 352IcmF-related_NInterPro annotationAdd BLAST238

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_003536_0_0_6

Identification of Orthologs from Complete Genome Data

More...OMAi		YFNQYLA

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR025743, IcmF-related_N_dom

Pfam protein domain database

More...Pfami		View protein in Pfam
PF14331, IcmF-related_N, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9I1B8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSGATLFMLV LLLVLLALLL GALGWWWRTR GGTEIRSFYA AVRQMEREQG 
        60         70         80         90        100
WQGRYEAPWL LMLGNETEGE QLCSTWRLLP VARPAWFGRW WSDGEGAILL 
       110        120        130        140        150
VPESVFLPDE GLRRQSGAWL RLLRLFLRLR GRRALDGVVW NIPLARLQDG 
       160        170        180        190        200
EQAANLGLAA RRRYVELTQR LGLSLPVYVV ITGMEDLPGF QELLAALPEE 
       210        220        230        240        250
ARERALGWSS PFAAEAAWQS RWCEQALEEI TATLTESIVE LGTLRGQVDN 
       260        270        280        290        300
ELYCLPPRLE SLRGSLQALL EPVFQGNARG EAPRFRGLYL SGSEAAGAAA 
       310        320        330        340        350
DEVLPAVDAP RRRSSFASQL WARRILAEEG LAQAVPRILQ LRQRWQRGIG 
       360        370        380        390        400
LAALCLCLLW GGLMTWVWRD ALRDAGELSQ LLHGASERYQ PLDDDTRRAA 
       410        420        430        440        450
QVRQNVQAWW QLVSQAPRWR FTSLAFPSSW FSSLDARIDN AYRRVSERLL 
       460        470        480        490        500
VRPLRSLLEG EASDLRAIRS DGQPGLKEGD DPSQWKDYLA AKDLVARATT 
       510        520        530        540        550
LERHNRLFAQ AIDNRRTPLD DLLQLSNDAL GSSYNAGSLA RLAYYNRTLF 
       560        570        580        590        600
AERPADLAAL DLGRVAATAA DNFHDLMARW LNAYFLTDSL ERTGNALTQE 
       610        620        630        640        650
LAQLGQERDA TAAQLLGIGE LINHLQQQVN RINLIWGNGV GQDLVPGYQN 
       660        670        680        690        700
LLKSAQQSSL LGNRVEELQN LTVQLQQQFR SEWIAPPEAA GDGLLVKQGA 
       710        720        730        740        750
TLKLADDLLG LKRAIDDLKT KDFVSVALAD KTLADHSLLS IDDIGVTQAL 
       760        770        780        790        800
SFFNDFTGYY ESTLPSLNPR YRYSVLHAAA SAATEAMWQS LGPRSRSLAS 
       810        820        830        840        850
RNASRFDVQV KQVQVLQAAL LELQDLQAGA RLLLSLNALA VADIGQALRD 
       860        870        880        890        900
IDEQAVLREP VDFSRWSGAP NFGLQMFRAQ DSAELKQSLN SQFNAMAAVA 
       910        920        930        940        950
ERHAPALEWL QAQQSSLATA DYNAFVRFSA LNAELQKFKA DNPASTAAQL 
       960        970        980        990       1000
AKLVGNDFNQ MDIGSCADIL NGVLLPSSRS DLATRLVDLR QGALGRCQSL 
      1010       1020       1030       1040       1050
QQQQAAQAWK DLADYFNQYL AGRFPFAYSL EAADAEPGRV RHLLQLMETR 
      1060       1070       1080       1090       1100
LPQVREGLAQ VRSPDLPAAE DFVRRLEQAQ RWLGPLFERD KSGLLGVALD 
      1110       1120       1130       1140       1150
IDWRSDRSLE RGADQVIAWS LYSGDQESRF PGAQDKGLTW NVGDPLKIML 
      1160       1170       1180       1190       1200
RWAKNGSQRP ADDPRQASLA VADLEAGWSY QGSWALLRMM RAHFSRQRPP 
      1210       1220       1230       1240       1250
NVDYTEFPLV LQLPVYAPYS PENEARMFLR LSLMSLGGKT PLSIQPLPVR 
      1260       1270 
APQSPFATLL PATVASTGGT P
Length:1,271
Mass (Da):141,348
Last modified:March 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i174B3D2587FEB6C3
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AE004091 Genomic DNA Translation: AAG05749.1

Protein sequence database of the Protein Information Resource

More...PIRi		E83350

NCBI Reference Sequences

More...RefSeqi		NP_251051.1, NC_002516.2
WP_003114521.1, NZ_QZGE01000021.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		AAG05749; AAG05749; PA2361

Database of genes from NCBI RefSeq genomes

More...GeneIDi		882236

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		pae:PA2361

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|208964.12.peg.2471

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE004091 Genomic DNA Translation: AAG05749.1
PIRiE83350
RefSeqiNP_251051.1, NC_002516.2
WP_003114521.1, NZ_QZGE01000021.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Proteomic databases

PaxDbiQ9I1B8
PRIDEiQ9I1B8

Genome annotation databases

EnsemblBacteriaiAAG05749; AAG05749; PA2361
GeneIDi882236
KEGGipae:PA2361
PATRICifig|208964.12.peg.2471

Organism-specific databases

PseudoCAPiPA2361

Phylogenomic databases

HOGENOMiCLU_003536_0_0_6
OMAiYFNQYLA

Enzyme and pathway databases

BioCyciPAER208964:G1FZ6-2400-MONOMER

Miscellaneous databases

PHI-baseiPHI:5263

Family and domain databases

InterProiView protein in InterPro
IPR025743, IcmF-related_N_dom
PfamiView protein in Pfam
PF14331, IcmF-related_N, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9I1B8_PSEAE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9I1B8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: December 2, 2020
This is version 82 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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