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Entry version 79 (22 Apr 2020)
Sequence version 1 (01 Mar 2001)
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Protein

ImcF-related_N domain-containing protein

Gene

PA2361

Organism
Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
PAER208964:G1FZ6-2400-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
ImcF-related_N domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:PA2361Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri208964 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002438 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

Organism-specific databases

Pseudomonas genome database

More...
PseudoCAPi
PA2361

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei6 – 27HelicalSequence analysisAdd BLAST22
Transmembranei349 – 368HelicalSequence analysisAdd BLAST20

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Miscellaneous databases

Pathogen-Host Interaction database

More...
PHI-basei
PHI:5263

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

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PaxDbi
Q9I1B8

PRoteomics IDEntifications database

More...
PRIDEi
Q9I1B8

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q9I1B8

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini115 – 352ImcF-related_NInterPro annotationAdd BLAST238

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG4108P3R Bacteria
COG3523 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_003536_0_0_6

KEGG Orthology (KO)

More...
KOi
K11891

Identification of Orthologs from Complete Genome Data

More...
OMAi
YFNQYLA

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR025743 IcmF-related_N_dom

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF14331 ImcF-related_N, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9I1B8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSGATLFMLV LLLVLLALLL GALGWWWRTR GGTEIRSFYA AVRQMEREQG
60 70 80 90 100
WQGRYEAPWL LMLGNETEGE QLCSTWRLLP VARPAWFGRW WSDGEGAILL
110 120 130 140 150
VPESVFLPDE GLRRQSGAWL RLLRLFLRLR GRRALDGVVW NIPLARLQDG
160 170 180 190 200
EQAANLGLAA RRRYVELTQR LGLSLPVYVV ITGMEDLPGF QELLAALPEE
210 220 230 240 250
ARERALGWSS PFAAEAAWQS RWCEQALEEI TATLTESIVE LGTLRGQVDN
260 270 280 290 300
ELYCLPPRLE SLRGSLQALL EPVFQGNARG EAPRFRGLYL SGSEAAGAAA
310 320 330 340 350
DEVLPAVDAP RRRSSFASQL WARRILAEEG LAQAVPRILQ LRQRWQRGIG
360 370 380 390 400
LAALCLCLLW GGLMTWVWRD ALRDAGELSQ LLHGASERYQ PLDDDTRRAA
410 420 430 440 450
QVRQNVQAWW QLVSQAPRWR FTSLAFPSSW FSSLDARIDN AYRRVSERLL
460 470 480 490 500
VRPLRSLLEG EASDLRAIRS DGQPGLKEGD DPSQWKDYLA AKDLVARATT
510 520 530 540 550
LERHNRLFAQ AIDNRRTPLD DLLQLSNDAL GSSYNAGSLA RLAYYNRTLF
560 570 580 590 600
AERPADLAAL DLGRVAATAA DNFHDLMARW LNAYFLTDSL ERTGNALTQE
610 620 630 640 650
LAQLGQERDA TAAQLLGIGE LINHLQQQVN RINLIWGNGV GQDLVPGYQN
660 670 680 690 700
LLKSAQQSSL LGNRVEELQN LTVQLQQQFR SEWIAPPEAA GDGLLVKQGA
710 720 730 740 750
TLKLADDLLG LKRAIDDLKT KDFVSVALAD KTLADHSLLS IDDIGVTQAL
760 770 780 790 800
SFFNDFTGYY ESTLPSLNPR YRYSVLHAAA SAATEAMWQS LGPRSRSLAS
810 820 830 840 850
RNASRFDVQV KQVQVLQAAL LELQDLQAGA RLLLSLNALA VADIGQALRD
860 870 880 890 900
IDEQAVLREP VDFSRWSGAP NFGLQMFRAQ DSAELKQSLN SQFNAMAAVA
910 920 930 940 950
ERHAPALEWL QAQQSSLATA DYNAFVRFSA LNAELQKFKA DNPASTAAQL
960 970 980 990 1000
AKLVGNDFNQ MDIGSCADIL NGVLLPSSRS DLATRLVDLR QGALGRCQSL
1010 1020 1030 1040 1050
QQQQAAQAWK DLADYFNQYL AGRFPFAYSL EAADAEPGRV RHLLQLMETR
1060 1070 1080 1090 1100
LPQVREGLAQ VRSPDLPAAE DFVRRLEQAQ RWLGPLFERD KSGLLGVALD
1110 1120 1130 1140 1150
IDWRSDRSLE RGADQVIAWS LYSGDQESRF PGAQDKGLTW NVGDPLKIML
1160 1170 1180 1190 1200
RWAKNGSQRP ADDPRQASLA VADLEAGWSY QGSWALLRMM RAHFSRQRPP
1210 1220 1230 1240 1250
NVDYTEFPLV LQLPVYAPYS PENEARMFLR LSLMSLGGKT PLSIQPLPVR
1260 1270
APQSPFATLL PATVASTGGT P
Length:1,271
Mass (Da):141,348
Last modified:March 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i174B3D2587FEB6C3
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AE004091 Genomic DNA Translation: AAG05749.1

Protein sequence database of the Protein Information Resource

More...
PIRi
E83350

NCBI Reference Sequences

More...
RefSeqi
NP_251051.1, NC_002516.2
WP_003114521.1, NZ_QZGE01000021.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AAG05749; AAG05749; PA2361

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
882236

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
pae:PA2361

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|208964.12.peg.2471

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE004091 Genomic DNA Translation: AAG05749.1
PIRiE83350
RefSeqiNP_251051.1, NC_002516.2
WP_003114521.1, NZ_QZGE01000021.1

3D structure databases

SMRiQ9I1B8
ModBaseiSearch...

Proteomic databases

PaxDbiQ9I1B8
PRIDEiQ9I1B8

Genome annotation databases

EnsemblBacteriaiAAG05749; AAG05749; PA2361
GeneIDi882236
KEGGipae:PA2361
PATRICifig|208964.12.peg.2471

Organism-specific databases

PseudoCAPiPA2361

Phylogenomic databases

eggNOGiENOG4108P3R Bacteria
COG3523 LUCA
HOGENOMiCLU_003536_0_0_6
KOiK11891
OMAiYFNQYLA

Enzyme and pathway databases

BioCyciPAER208964:G1FZ6-2400-MONOMER

Miscellaneous databases

PHI-baseiPHI:5263

Family and domain databases

InterProiView protein in InterPro
IPR025743 IcmF-related_N_dom
PfamiView protein in Pfam
PF14331 ImcF-related_N, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9I1B8_PSEAE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9I1B8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: April 22, 2020
This is version 79 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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