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Entry version 85 (26 Feb 2020)
Sequence version 1 (01 Mar 2001)
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Protein

Probable family 20 transposase

Gene

PA0445

more
Organism
Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Required for the transposition of an insertion element.Curated

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-binding
Biological processDNA recombination, Transposition

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
PAER208964:G1FZ6-2358-MONOMER
PAER208964:G1FZ6-2730-MONOMER
PAER208964:G1FZ6-4066-MONOMER
PAER208964:G1FZ6-4910-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Probable family 20 transposase
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:PA0445
AND
Ordered Locus Names:PA2319
AND
Ordered Locus Names:PA2690
AND
Ordered Locus Names:PA3434
AND
Ordered Locus Names:PA3993
AND
Ordered Locus Names:PA4797
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri208964 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002438 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

Organism-specific databases

Pseudomonas genome database

More...
PseudoCAPi
PA0445
PA2319
PA2690
PA3434
PA3993
PA4797

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002887941 – 338Probable family 20 transposaseAdd BLAST338

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9HI37

PRoteomics IDEntifications database

More...
PRIDEi
Q9HI37

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q9HI37

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the transposase 20 family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG4105EQR Bacteria
COG3547 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_036902_3_1_6

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9HI37

KEGG Orthology (KO)

More...
KOi
K07486

Identification of Orthologs from Complete Genome Data

More...
OMAi
LREFGHI

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9HI37

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR003346 Transposase_20
IPR002525 Transposase_N

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01548 DEDD_Tnp_IS110, 1 hit
PF02371 Transposase_20, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9HI37-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNLSRIGLDL AKQVFQVHGV DRHEHVVCRR QLKRAQVRDF FRQLPPCLVA
60 70 80 90 100
MEACGSAHYW ARELRELGHT VRLIAPQFVK PYVKGDKHDA HDAEAICEAA
110 120 130 140 150
SRPSMRYVPV KSAEQQAVQS MHRVRSRLVR ARTALCNEVR GLLGEFGLIA
160 170 180 190 200
TRRGRAATMA LLETVMATEP APLPAPMGEL LRELKDELQT LEARIARLER
210 220 230 240 250
QIQAHVRGDA RIQRLLAVEG IGPISASAVA ASAGDARQFR TGRQFAAWLG
260 270 280 290 300
LVPRQHSTGG QQRLGNISKR GDTYLRTLLI HGARAVVRCC ANKTDARSRW
310 320 330
LQGLLQRRPA NVVAVALANK NARILWALLS RETCYRPG
Length:338
Mass (Da):37,677
Last modified:March 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i8210674EC791C66C
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AE004091 Genomic DNA Translation: AAG03834.1
AE004091 Genomic DNA Translation: AAG05707.1
AE004091 Genomic DNA Translation: AAG06078.1
AE004091 Genomic DNA Translation: AAG06822.1
AE004091 Genomic DNA Translation: AAG07380.1
AE004091 Genomic DNA Translation: AAG08183.1

Protein sequence database of the Protein Information Resource

More...
PIRi
H83216

NCBI Reference Sequences

More...
RefSeqi
NP_249136.1, NC_002516.2
NP_251009.1, NC_002516.2
NP_251380.1, NC_002516.2
NP_252124.1, NC_002516.2
NP_252682.1, NC_002516.2
NP_253485.1, NC_002516.2
WP_003147159.1, NZ_QZGE01000059.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AAG03834; AAG03834; PA0445
AAG05707; AAG05707; PA2319
AAG06078; AAG06078; PA2690
AAG06822; AAG06822; PA3434
AAG07380; AAG07380; PA3993
AAG08183; AAG08183; PA4797

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
878900
878942
879390
880407
881905
882896

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
pae:PA0445
pae:PA2319
pae:PA2690
pae:PA3434
pae:PA3993
pae:PA4797

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|208964.12.peg.2424

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE004091 Genomic DNA Translation: AAG03834.1
AE004091 Genomic DNA Translation: AAG05707.1
AE004091 Genomic DNA Translation: AAG06078.1
AE004091 Genomic DNA Translation: AAG06822.1
AE004091 Genomic DNA Translation: AAG07380.1
AE004091 Genomic DNA Translation: AAG08183.1
PIRiH83216
RefSeqiNP_249136.1, NC_002516.2
NP_251009.1, NC_002516.2
NP_251380.1, NC_002516.2
NP_252124.1, NC_002516.2
NP_252682.1, NC_002516.2
NP_253485.1, NC_002516.2
WP_003147159.1, NZ_QZGE01000059.1

3D structure databases

SMRiQ9HI37
ModBaseiSearch...

Proteomic databases

PaxDbiQ9HI37
PRIDEiQ9HI37

Protocols and materials databases

The DNASU plasmid repository

More...
DNASUi
882896

Genome annotation databases

EnsemblBacteriaiAAG03834; AAG03834; PA0445
AAG05707; AAG05707; PA2319
AAG06078; AAG06078; PA2690
AAG06822; AAG06822; PA3434
AAG07380; AAG07380; PA3993
AAG08183; AAG08183; PA4797
GeneIDi878900
878942
879390
880407
881905
882896
KEGGipae:PA0445
pae:PA2319
pae:PA2690
pae:PA3434
pae:PA3993
pae:PA4797
PATRICifig|208964.12.peg.2424

Organism-specific databases

PseudoCAPiPA0445
PA2319
PA2690
PA3434
PA3993
PA4797

Phylogenomic databases

eggNOGiENOG4105EQR Bacteria
COG3547 LUCA
HOGENOMiCLU_036902_3_1_6
InParanoidiQ9HI37
KOiK07486
OMAiLREFGHI
PhylomeDBiQ9HI37

Enzyme and pathway databases

BioCyciPAER208964:G1FZ6-2358-MONOMER
PAER208964:G1FZ6-2730-MONOMER
PAER208964:G1FZ6-4066-MONOMER
PAER208964:G1FZ6-4910-MONOMER

Family and domain databases

InterProiView protein in InterPro
IPR003346 Transposase_20
IPR002525 Transposase_N
PfamiView protein in Pfam
PF01548 DEDD_Tnp_IS110, 1 hit
PF02371 Transposase_20, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiTPF20_PSEAE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9HI37
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 29, 2007
Last sequence update: March 1, 2001
Last modified: February 26, 2020
This is version 85 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome, Transposable element

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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