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Protein

Pentatricopeptide repeat-containing protein At1g19720

Gene

DYW7

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

  • RNA modification Source: GO_Central

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g19720
Alternative name(s):
Protein DYW7
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:DYW7
Synonyms:PCMP-H7
Ordered Locus Names:At1g19720
ORF Names:F14P1.33, F6F9.22
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G19720

The Arabidopsis Information Resource

More...
TAIRi
locus:2013079 AT1G19720

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003427931 – 894Pentatricopeptide repeat-containing protein At1g19720Add BLAST894

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

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PaxDbi
Q9FXH1

PRoteomics IDEntifications database

More...
PRIDEi
Q9FXH1

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9FXH1 baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT1G19720.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
Q9FXH1

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9FXH1

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati80 – 110PPR 1Add BLAST31
Repeati114 – 144PPR 2Add BLAST31
Repeati145 – 179PPR 3Add BLAST35
Repeati180 – 214PPR 4Add BLAST35
Repeati215 – 245PPR 5Add BLAST31
Repeati246 – 280PPR 6Add BLAST35
Repeati281 – 315PPR 7Add BLAST35
Repeati316 – 350PPR 8Add BLAST35
Repeati351 – 385PPR 9Add BLAST35
Repeati386 – 416PPR 10Add BLAST31
Repeati417 – 451PPR 11Add BLAST35
Repeati452 – 486PPR 12Add BLAST35
Repeati488 – 522PPR 13Add BLAST35
Repeati523 – 557PPR 14Add BLAST35
Repeati558 – 588PPR 15Add BLAST31
Repeati589 – 623PPR 16Add BLAST35
Repeati624 – 659PPR 17Add BLAST36
Repeati660 – 694PPR 18Add BLAST35

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni695 – 770Type E motifAdd BLAST76
Regioni771 – 801Type E(+) motifAdd BLAST31
Regioni803 – 894Type DYW motifAdd BLAST92

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG4197 Eukaryota
ENOG410Z7Z7 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000237570

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9FXH1

Identification of Orthologs from Complete Genome Data

More...
OMAi
CAYTEDL

Database of Orthologous Groups

More...
OrthoDBi
EOG093602D5

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9FXH1

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.40.10, 5 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 3 hits
PF13041 PPR_2, 5 hits

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR00756 PPR, 9 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51375 PPR, 14 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9FXH1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEKLFVPSFP KTFLNYQTPA KVENSPELHP KSRKKNLSFT KKKEPNIIPD
60 70 80 90 100
EQFDYLCRNG SLLEAEKALD SLFQQGSKVK RSTYLKLLES CIDSGSIHLG
110 120 130 140 150
RILHARFGLF TEPDVFVETK LLSMYAKCGC IADARKVFDS MRERNLFTWS
160 170 180 190 200
AMIGAYSREN RWREVAKLFR LMMKDGVLPD DFLFPKILQG CANCGDVEAG
210 220 230 240 250
KVIHSVVIKL GMSSCLRVSN SILAVYAKCG ELDFATKFFR RMRERDVIAW
260 270 280 290 300
NSVLLAYCQN GKHEEAVELV KEMEKEGISP GLVTWNILIG GYNQLGKCDA
310 320 330 340 350
AMDLMQKMET FGITADVFTW TAMISGLIHN GMRYQALDMF RKMFLAGVVP
360 370 380 390 400
NAVTIMSAVS ACSCLKVINQ GSEVHSIAVK MGFIDDVLVG NSLVDMYSKC
410 420 430 440 450
GKLEDARKVF DSVKNKDVYT WNSMITGYCQ AGYCGKAYEL FTRMQDANLR
460 470 480 490 500
PNIITWNTMI SGYIKNGDEG EAMDLFQRME KDGKVQRNTA TWNLIIAGYI
510 520 530 540 550
QNGKKDEALE LFRKMQFSRF MPNSVTILSL LPACANLLGA KMVREIHGCV
560 570 580 590 600
LRRNLDAIHA VKNALTDTYA KSGDIEYSRT IFLGMETKDI ITWNSLIGGY
610 620 630 640 650
VLHGSYGPAL ALFNQMKTQG ITPNRGTLSS IILAHGLMGN VDEGKKVFYS
660 670 680 690 700
IANDYHIIPA LEHCSAMVYL YGRANRLEEA LQFIQEMNIQ SETPIWESFL
710 720 730 740 750
TGCRIHGDID MAIHAAENLF SLEPENTATE SIVSQIYALG AKLGRSLEGN
760 770 780 790 800
KPRRDNLLKK PLGQSWIEVR NLIHTFTTGD QSKLCTDVLY PLVEKMSRLD
810 820 830 840 850
NRSDQYNGEL WIEEEGREET CGIHSEKFAM AFGLISSSGA SKTTIRILKN
860 870 880 890
LRMCRDCHDT AKYVSKRYGC DILLEDTRCL HHFKNGDCSC KDYW
Length:894
Mass (Da):100,815
Last modified:March 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i529FD2BFD65AB447
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAF01011 differs from that shown. Reason: Erroneous initiation.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti489T → P in CAA06829 (PubMed:10809006).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC007797 Genomic DNA Translation: AAG12555.1
AC024609 Genomic DNA No translation available.
CP002684 Genomic DNA Translation: AEE29891.1
AK229137 mRNA Translation: BAF01011.1 Different initiation.
AJ006040 mRNA Translation: CAA06829.1

Protein sequence database of the Protein Information Resource

More...
PIRi
C86330
T52647

NCBI Reference Sequences

More...
RefSeqi
NP_173402.2, NM_101828.2

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
At.16215

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G19720.1; AT1G19720.1; AT1G19720

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
838561

Gramene; a comparative resource for plants

More...
Gramenei
AT1G19720.1; AT1G19720.1; AT1G19720

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G19720

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

<p>This subsection of the <a href="http://www.uniprot.org/manual/cross_references_section">Cross-references</a> section provides links to various web resources that are relevant for a specific protein.<p><a href='/help/web_resource' target='_top'>More...</a></p>Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC007797 Genomic DNA Translation: AAG12555.1
AC024609 Genomic DNA No translation available.
CP002684 Genomic DNA Translation: AEE29891.1
AK229137 mRNA Translation: BAF01011.1 Different initiation.
AJ006040 mRNA Translation: CAA06829.1
PIRiC86330
T52647
RefSeqiNP_173402.2, NM_101828.2
UniGeneiAt.16215

3D structure databases

ProteinModelPortaliQ9FXH1
SMRiQ9FXH1
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G19720.1

Proteomic databases

PaxDbiQ9FXH1
PRIDEiQ9FXH1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G19720.1; AT1G19720.1; AT1G19720
GeneIDi838561
GrameneiAT1G19720.1; AT1G19720.1; AT1G19720
KEGGiath:AT1G19720

Organism-specific databases

AraportiAT1G19720
TAIRilocus:2013079 AT1G19720

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9FXH1
OMAiCAYTEDL
OrthoDBiEOG093602D5
PhylomeDBiQ9FXH1

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9FXH1

Gene expression databases

ExpressionAtlasiQ9FXH1 baseline and differential

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 3 hits
PF13041 PPR_2, 5 hits
TIGRFAMsiTIGR00756 PPR, 9 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 14 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPPR52_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9FXH1
Secondary accession number(s): Q0WPD8, Q9M4P6
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: March 1, 2001
Last modified: November 7, 2018
This is version 104 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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