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Entry version 100 (02 Dec 2020)
Sequence version 1 (01 Mar 2001)
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Protein
Submitted name:

VPS13-like protein

Gene

At5g24740

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

  • root meristem growth Source: CACAO

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
VPS13-like proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At5g24740Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9FT44, baseline and differential

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini11 – 118Chorein_NInterPro annotationAdd BLAST108
Domaini144 – 232VPS13InterPro annotationAdd BLAST89
Domaini451 – 671VPS13_mid_rptInterPro annotationAdd BLAST221
Domaini2298 – 2543SHR-BDInterPro annotationAdd BLAST246
Domaini2860 – 3027VPS13_CInterPro annotationAdd BLAST168

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni276 – 300DisorderedSequence analysisAdd BLAST25

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi282 – 296PolyampholyteSequence analysisAdd BLAST15

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the VPS13 family.ARBA annotation

Phylogenomic databases

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9FT44

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR009543, SHR-BD
IPR026847, VPS13
IPR026854, VPS13-like_N
IPR031645, VPS13_C
IPR031642, VPS13_mid_rpt
IPR031646, VPS13_N2

The PANTHER Classification System

More...
PANTHERi
PTHR16166, PTHR16166, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF12624, Chorein_N, 1 hit
PF06650, SHR-BD, 1 hit
PF16908, VPS13, 1 hit
PF16909, VPS13_C, 1 hit
PF16910, VPS13_mid_rpt, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9FT44-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLEGYVQGFV NLLLGYLGRY IKDIQKDQLK ISLWNGEVLL ENVELNPEAF
60 70 80 90 100
EYLQLPIALK QGRVGKLSIK IPWKKLHRDP VTIMIEDVFI CASQRNDQEW
110 120 130 140 150
SSDVVEKREF AGKKAKLASA ELAKLSRRVF DNPGGNSYMS YITAKVNRSG
160 170 180 190 200
ELYDDLPQYS ISAELTDVVV TLNEFQLQQI LILLDYLQTS QLRERYGRYR
210 220 230 240 250
PCSTSLSRKP PGWQKLWWHY AQNSVLSDSI DKSIRLGLEE LEKKSDIDDI
260 270 280 290 300
LSYRSAAEGE MQEACSELTV NMGATGATRS EKEQSAPEKE PSDDPTLNKS
310 320 330 340 350
RGWLNWLSRG MLGAGGTEDS SQFSGVVSDE VVKDIHKATK FYPLSSSPRN
360 370 380 390 400
TSATGKICTC SIRLNVRKFS ATLQHISGSS SQVITELDIL GVIVECKSWK
410 420 430 440 450
DSTAMILSVI SGRLVYPHNG KEILTMKRVC SQSDTLETKP SYGARLELSK
460 470 480 490 500
DHDVALSLKA TLQPLEAAYD GGFILAVSNF FSGSRYFKLQ HERILSSLNG
510 520 530 540 550
LESETRLAAK AEYLLSSRNK VKWDLDIKDL TLSFPGRLVE SESYNLVLVL
560 570 580 590 600
ESLSITSSST DALSQIPRLQ SDVDHVVNSL QSSVEALDAF QVKDLYDHFD
610 620 630 640 650
IKICNLEMKL MKIHPFQELP LVEKSSLLIK FASCIIPEES ILKQLEVEAT
660 670 680 690 700
LPMFNVHFSP SIFKGVMSVI EYLDIQDHGT RNPPPSPAPI FHFTIKTDLA
710 720 730 740 750
FLRLHVNLEN KGENSTVLVL SIQQLDLWYS RAIFEEWSVR AKTLEITACS
760 770 780 790 800
SKDAADSHIL CSSGNLLKSS SHGHGMDAHT SDETNIIDYR TTPEAAISLN
810 820 830 840 850
CKVSQTSYKI SSSYTNPSSL ATDTIAPTEI PQFDFERFGF SNFTESRSCG
860 870 880 890 900
CIPLDKFPFV TINNSGSLHS LESSLCYSTS DWRKLFILKN RKDGAQIGLN
910 920 930 940 950
CECNSCTFQL KRDCPLNGLA SSRDLGQTNH FTVDMHVFNT NVHFHDSSSV
960 970 980 990 1000
FGTIILPVSR YFLNISDDLL DLVASAEDLM LVSSLFTNYS GGFLWKQSST
1010 1020 1030 1040 1050
DVSQVLNLRV RKRGLEPSGS QLEVSIGIQH TYCILPPEYL AIIIGYFSLS
1060 1070 1080 1090 1100
DWTSKSGLQS LPQATELTKA HSEFAISYKI EILDSSIVLP VEGDDRRQLK
1110 1120 1130 1140 1150
VDIQQLYISF IPECALSNVV QHIPQECVIP LNQVLGRADC LNIFGRDLSV
1160 1170 1180 1190 1200
SLLLSESDIS TFKKNAVCRS ITLAASIIAD TWIRFPCDHN PLTELACVMS
1210 1220 1230 1240 1250
RVDVCEIVVD DALDGFKAFL DVVDQLSLVD EESKLFVSDV PQFLHTKMRL
1260 1270 1280 1290 1300
KQELSVAPLE PSTSFIKFRI FVNLLTSKLH RLRKAPGTLL SEPVLQADMK
1310 1320 1330 1340 1350
FVCSGELKNN FPMSLDVQFF KIGLYSLLSS VMLARCINAD GDPSALRVRF
1360 1370 1380 1390 1400
TEQAENEYDL CFSLPSLDIW LHFFDWIEVI ELLKSYSQKL EDSSEDRFFS
1410 1420 1430 1440 1450
KGSKLDMDES IGVVRTICDN TDRVLNVLQT EVSENSSEVM SFAARSENIG
1460 1470 1480 1490 1500
VKIHIPLCTS HTEFPGFMAT DVHEISEEEH TNCFKGNYCK YVSVTACSRS
1510 1520 1530 1540 1550
GELSILGRDV KLSYKIEKLN GILAISGVDT VRSCSLFGAA QLLVETSIQM
1560 1570 1580 1590 1600
DQNKIMSIDV GILSDKVEMH ASHQVLSFWH GITFDAPETP SSQNSEGNMS
1610 1620 1630 1640 1650
IKVQIRDVSL LISDGKWGCS GMLLEVLMRN FLLQANLAEK NMESLVSCDL
1660 1670 1680 1690 1700
EVNYNNMHKV LWEPFIEPWN FDIKLSRKFD ANSLLNNAGL TEVIVASSNQ
1710 1720 1730 1740 1750
LNLNLTESLF ECIFRIIEML NILELMETDA IPDNKGLSVY CTNSTRTERY
1760 1770 1780 1790 1800
SPYVLQNLTS LPLGYQVFQG HDSDVLNISA PVAQNFVQPG CSVPIYIDNS
1810 1820 1830 1840 1850
DTLLIPDRRR SQFGCSSSES GDAIHHYMKV QLDGTSFASP PHSMDRIGLS
1860 1870 1880 1890 1900
YFEVDFSKTS NSSDNVEKAS KSGYGSSFVV PVVYEVSLQQ QSKLIRVYST
1910 1920 1930 1940 1950
VIILNSTSMP LELRFDIPFG ISPKLPYLVD LNTIFYYSYA ILFQILDPIF
1960 1970 1980 1990 2000
PGQEFPLPLH LAKSGRLRWR PLGDSYLWSE AHSISKVLSQ DSGIGFRRSF
2010 2020 2030 2040 2050
ACYPCHPSHE PFRCCISVQS TSLPASFHIN DLSAGNFGQQ LHNLDQSREQ
2060 2070 2080 2090 2100
FIHQVTLSTP FVVSNCLPDP ISLSIESGGI TQTASLPETP FHHIDPSHDL
2110 2120 2130 2140 2150
VLEFKLNGCR TSSLKFSRSE TFSTEAKFSG GKFSQIETIS FDSHVGGGSV
2160 2170 2180 2190 2200
YVSCEKTMDA TCGAREVLIF VPFLLYNCTG TPLIVSDCTN ETKGIYSVIP
2210 2220 2230 2240 2250
SCYNLIEQHF VQSRKVGLGI LTSEKDLLDK AVMEDIPCSP SSSECSNTAS
2260 2270 2280 2290 2300
STERFIDKHA TQSTRQVPFA AYPKDSAIVR KRSLSSKSLR EVCFQGNDES
2310 2320 2330 2340 2350
GKVKACIYSP CPISRVSDTM IRVKRDLPGW VNSSSPYPLW SAPFPLVPPS
2360 2370 2380 2390 2400
GSTNVVVPQP SPGESSLLSV TCSILGGALA GRTQAITFQP SHNLCYKQKG
2410 2420 2430 2440 2450
TNLVSHLAVG QHSQLQWTDT TRELLVSIRL NEPGWQWSGS FLPDHLGDTQ
2460 2470 2480 2490 2500
LKIWNYVNKA FNMVRVEVQN ANMSSGDEKI VGSVHGHVGT NFILLSDDDM
2510 2520 2530 2540 2550
GYMPYRIDNF SNERLRVYQQ KCETFDTIVH PYTSCPYAWD EPCYPHRLTI
2560 2570 2580 2590 2600
EVPGDRVLGS YAFEITKQPI AVHLRSTSEK PERTLLLSIC AEGATKVFSV
2610 2620 2630 2640 2650
VDSGYHAIKD IKETFDSRFH EKGKKKLQTD NIIRYTETFL LVLPSIGISL
2660 2670 2680 2690 2700
VNSHPQELVY ACASNVVLEL SQSVDQQKLS FQISSLQIDN PLQNSSYPVI
2710 2720 2730 2740 2750
LSFNHDHEVI PPDWGMKNNK AILLSEIVQQ VRGNSCDAVV YVDLAKWRKK
2760 2770 2780 2790 2800
DVSLVSFEYI NIRIGEFGLE LELQTLLSLL EFVKAVLPNS QARLLPLSDP
2810 2820 2830 2840 2850
TLRPLIYDTG SKDISSEDTP HARNIPVFNK NQRSIVALPI VVPIGAPWQH
2860 2870 2880 2890 2900
IHLLARRRRK IYVETFDLAP IQFTLSFCSA PWMLRNGILT SGESLIHRGL
2910 2920 2930 2940 2950
MALADVEGAR IHLKQLTIAH QITSWESFQE ILVGHYTRQI LHEIYKVFGS
2960 2970 2980 2990 3000
AGVIGNPMGF ARNVAFGIKD FLSAPSRSIS KSPAGIIQGM AHGTTSLFSS
3010 3020 3030 3040 3050
TIYALSDAAT QFSKAAHKGI VAFTFNDHDV ARMEKQQLGE GSRSKGVIGE
3060 3070 3080 3090 3100
VFEGLTGLLQ SPIRGAEKHG LPGVISGVAM GITGLVARPT ASILEVTGKT
3110 3120 3130 3140 3150
AQSIRNRSRI HNIRSQRHRL RLPRPLSREQ PLRPYSWEEA VGTAVLMEVG
3160 3170 3180 3190 3200
DSLKFKGEKL VKCKALKQEG AFVVITGRLV LVLSSLSLVD FRKQGFLGVP
3210 3220 3230 3240 3250
IDLVWNIERE IGLESVIHTD CSGGVVRIIG SNSDGVWNWR QDQQKKSSPT
3260 3270 3280 3290 3300
KKRWNNPSAQ PLLQTNLEFP SEEEAEDLLS VLLSTIETGK SRSWHSRFVL

SRSNIT
Length:3,306
Mass (Da):368,489
Last modified:March 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i122B0D048E6C1E99
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AL392145 Genomic DNA Translation: CAC08248.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL392145 Genomic DNA Translation: CAC08248.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Phylogenomic databases

PhylomeDBiQ9FT44

Gene expression databases

ExpressionAtlasiQ9FT44, baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR009543, SHR-BD
IPR026847, VPS13
IPR026854, VPS13-like_N
IPR031645, VPS13_C
IPR031642, VPS13_mid_rpt
IPR031646, VPS13_N2
PANTHERiPTHR16166, PTHR16166, 1 hit
PfamiView protein in Pfam
PF12624, Chorein_N, 1 hit
PF06650, SHR-BD, 1 hit
PF16908, VPS13, 1 hit
PF16909, VPS13_C, 1 hit
PF16910, VPS13_mid_rpt, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9FT44_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9FT44
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: December 2, 2020
This is version 100 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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