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UniProtKB - Q9FT44 (Q9FT44_ARATH)

Entry version 100 (02 Dec 2020)
Sequence version 1 (01 Mar 2001)
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Protein
Submitted name:

VPS13-like protein

Gene

At5g24740

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

  • root meristem growth Source: CACAO
Complete GO annotation on QuickGO ...

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
VPS13-like proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At5g24740Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		Q9FT44, baseline and differential

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini11 – 118Chorein_NInterPro annotationAdd BLAST108
Domaini144 – 232VPS13InterPro annotationAdd BLAST89
Domaini451 – 671VPS13_mid_rptInterPro annotationAdd BLAST221
Domaini2298 – 2543SHR-BDInterPro annotationAdd BLAST246
Domaini2860 – 3027VPS13_CInterPro annotationAdd BLAST168

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni276 – 300DisorderedSequence analysisAdd BLAST25

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi282 – 296PolyampholyteSequence analysisAdd BLAST15

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the VPS13 family.ARBA annotation

Phylogenomic databases

Database for complete collections of gene phylogenies

More...PhylomeDBi		Q9FT44

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR009543, SHR-BD
IPR026847, VPS13
IPR026854, VPS13-like_N
IPR031645, VPS13_C
IPR031642, VPS13_mid_rpt
IPR031646, VPS13_N2

The PANTHER Classification System

More...PANTHERi		PTHR16166, PTHR16166, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF12624, Chorein_N, 1 hit
PF06650, SHR-BD, 1 hit
PF16908, VPS13, 1 hit
PF16909, VPS13_C, 1 hit
PF16910, VPS13_mid_rpt, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9FT44-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLEGYVQGFV NLLLGYLGRY IKDIQKDQLK ISLWNGEVLL ENVELNPEAF 
        60         70         80         90        100
EYLQLPIALK QGRVGKLSIK IPWKKLHRDP VTIMIEDVFI CASQRNDQEW 
       110        120        130        140        150
SSDVVEKREF AGKKAKLASA ELAKLSRRVF DNPGGNSYMS YITAKVNRSG 
       160        170        180        190        200
ELYDDLPQYS ISAELTDVVV TLNEFQLQQI LILLDYLQTS QLRERYGRYR 
       210        220        230        240        250
PCSTSLSRKP PGWQKLWWHY AQNSVLSDSI DKSIRLGLEE LEKKSDIDDI 
       260        270        280        290        300
LSYRSAAEGE MQEACSELTV NMGATGATRS EKEQSAPEKE PSDDPTLNKS 
       310        320        330        340        350
RGWLNWLSRG MLGAGGTEDS SQFSGVVSDE VVKDIHKATK FYPLSSSPRN 
       360        370        380        390        400
TSATGKICTC SIRLNVRKFS ATLQHISGSS SQVITELDIL GVIVECKSWK 
       410        420        430        440        450
DSTAMILSVI SGRLVYPHNG KEILTMKRVC SQSDTLETKP SYGARLELSK 
       460        470        480        490        500
DHDVALSLKA TLQPLEAAYD GGFILAVSNF FSGSRYFKLQ HERILSSLNG 
       510        520        530        540        550
LESETRLAAK AEYLLSSRNK VKWDLDIKDL TLSFPGRLVE SESYNLVLVL 
       560        570        580        590        600
ESLSITSSST DALSQIPRLQ SDVDHVVNSL QSSVEALDAF QVKDLYDHFD 
       610        620        630        640        650
IKICNLEMKL MKIHPFQELP LVEKSSLLIK FASCIIPEES ILKQLEVEAT 
       660        670        680        690        700
LPMFNVHFSP SIFKGVMSVI EYLDIQDHGT RNPPPSPAPI FHFTIKTDLA 
       710        720        730        740        750
FLRLHVNLEN KGENSTVLVL SIQQLDLWYS RAIFEEWSVR AKTLEITACS 
       760        770        780        790        800
SKDAADSHIL CSSGNLLKSS SHGHGMDAHT SDETNIIDYR TTPEAAISLN 
       810        820        830        840        850
CKVSQTSYKI SSSYTNPSSL ATDTIAPTEI PQFDFERFGF SNFTESRSCG 
       860        870        880        890        900
CIPLDKFPFV TINNSGSLHS LESSLCYSTS DWRKLFILKN RKDGAQIGLN 
       910        920        930        940        950
CECNSCTFQL KRDCPLNGLA SSRDLGQTNH FTVDMHVFNT NVHFHDSSSV 
       960        970        980        990       1000
FGTIILPVSR YFLNISDDLL DLVASAEDLM LVSSLFTNYS GGFLWKQSST 
      1010       1020       1030       1040       1050
DVSQVLNLRV RKRGLEPSGS QLEVSIGIQH TYCILPPEYL AIIIGYFSLS 
      1060       1070       1080       1090       1100
DWTSKSGLQS LPQATELTKA HSEFAISYKI EILDSSIVLP VEGDDRRQLK 
      1110       1120       1130       1140       1150
VDIQQLYISF IPECALSNVV QHIPQECVIP LNQVLGRADC LNIFGRDLSV 
      1160       1170       1180       1190       1200
SLLLSESDIS TFKKNAVCRS ITLAASIIAD TWIRFPCDHN PLTELACVMS 
      1210       1220       1230       1240       1250
RVDVCEIVVD DALDGFKAFL DVVDQLSLVD EESKLFVSDV PQFLHTKMRL 
      1260       1270       1280       1290       1300
KQELSVAPLE PSTSFIKFRI FVNLLTSKLH RLRKAPGTLL SEPVLQADMK 
      1310       1320       1330       1340       1350
FVCSGELKNN FPMSLDVQFF KIGLYSLLSS VMLARCINAD GDPSALRVRF 
      1360       1370       1380       1390       1400
TEQAENEYDL CFSLPSLDIW LHFFDWIEVI ELLKSYSQKL EDSSEDRFFS 
      1410       1420       1430       1440       1450
KGSKLDMDES IGVVRTICDN TDRVLNVLQT EVSENSSEVM SFAARSENIG 
      1460       1470       1480       1490       1500
VKIHIPLCTS HTEFPGFMAT DVHEISEEEH TNCFKGNYCK YVSVTACSRS 
      1510       1520       1530       1540       1550
GELSILGRDV KLSYKIEKLN GILAISGVDT VRSCSLFGAA QLLVETSIQM 
      1560       1570       1580       1590       1600
DQNKIMSIDV GILSDKVEMH ASHQVLSFWH GITFDAPETP SSQNSEGNMS 
      1610       1620       1630       1640       1650
IKVQIRDVSL LISDGKWGCS GMLLEVLMRN FLLQANLAEK NMESLVSCDL 
      1660       1670       1680       1690       1700
EVNYNNMHKV LWEPFIEPWN FDIKLSRKFD ANSLLNNAGL TEVIVASSNQ 
      1710       1720       1730       1740       1750
LNLNLTESLF ECIFRIIEML NILELMETDA IPDNKGLSVY CTNSTRTERY 
      1760       1770       1780       1790       1800
SPYVLQNLTS LPLGYQVFQG HDSDVLNISA PVAQNFVQPG CSVPIYIDNS 
      1810       1820       1830       1840       1850
DTLLIPDRRR SQFGCSSSES GDAIHHYMKV QLDGTSFASP PHSMDRIGLS 
      1860       1870       1880       1890       1900
YFEVDFSKTS NSSDNVEKAS KSGYGSSFVV PVVYEVSLQQ QSKLIRVYST 
      1910       1920       1930       1940       1950
VIILNSTSMP LELRFDIPFG ISPKLPYLVD LNTIFYYSYA ILFQILDPIF 
      1960       1970       1980       1990       2000
PGQEFPLPLH LAKSGRLRWR PLGDSYLWSE AHSISKVLSQ DSGIGFRRSF 
      2010       2020       2030       2040       2050
ACYPCHPSHE PFRCCISVQS TSLPASFHIN DLSAGNFGQQ LHNLDQSREQ 
      2060       2070       2080       2090       2100
FIHQVTLSTP FVVSNCLPDP ISLSIESGGI TQTASLPETP FHHIDPSHDL 
      2110       2120       2130       2140       2150
VLEFKLNGCR TSSLKFSRSE TFSTEAKFSG GKFSQIETIS FDSHVGGGSV 
      2160       2170       2180       2190       2200
YVSCEKTMDA TCGAREVLIF VPFLLYNCTG TPLIVSDCTN ETKGIYSVIP 
      2210       2220       2230       2240       2250
SCYNLIEQHF VQSRKVGLGI LTSEKDLLDK AVMEDIPCSP SSSECSNTAS 
      2260       2270       2280       2290       2300
STERFIDKHA TQSTRQVPFA AYPKDSAIVR KRSLSSKSLR EVCFQGNDES 
      2310       2320       2330       2340       2350
GKVKACIYSP CPISRVSDTM IRVKRDLPGW VNSSSPYPLW SAPFPLVPPS 
      2360       2370       2380       2390       2400
GSTNVVVPQP SPGESSLLSV TCSILGGALA GRTQAITFQP SHNLCYKQKG 
      2410       2420       2430       2440       2450
TNLVSHLAVG QHSQLQWTDT TRELLVSIRL NEPGWQWSGS FLPDHLGDTQ 
      2460       2470       2480       2490       2500
LKIWNYVNKA FNMVRVEVQN ANMSSGDEKI VGSVHGHVGT NFILLSDDDM 
      2510       2520       2530       2540       2550
GYMPYRIDNF SNERLRVYQQ KCETFDTIVH PYTSCPYAWD EPCYPHRLTI 
      2560       2570       2580       2590       2600
EVPGDRVLGS YAFEITKQPI AVHLRSTSEK PERTLLLSIC AEGATKVFSV 
      2610       2620       2630       2640       2650
VDSGYHAIKD IKETFDSRFH EKGKKKLQTD NIIRYTETFL LVLPSIGISL 
      2660       2670       2680       2690       2700
VNSHPQELVY ACASNVVLEL SQSVDQQKLS FQISSLQIDN PLQNSSYPVI 
      2710       2720       2730       2740       2750
LSFNHDHEVI PPDWGMKNNK AILLSEIVQQ VRGNSCDAVV YVDLAKWRKK 
      2760       2770       2780       2790       2800
DVSLVSFEYI NIRIGEFGLE LELQTLLSLL EFVKAVLPNS QARLLPLSDP 
      2810       2820       2830       2840       2850
TLRPLIYDTG SKDISSEDTP HARNIPVFNK NQRSIVALPI VVPIGAPWQH 
      2860       2870       2880       2890       2900
IHLLARRRRK IYVETFDLAP IQFTLSFCSA PWMLRNGILT SGESLIHRGL 
      2910       2920       2930       2940       2950
MALADVEGAR IHLKQLTIAH QITSWESFQE ILVGHYTRQI LHEIYKVFGS 
      2960       2970       2980       2990       3000
AGVIGNPMGF ARNVAFGIKD FLSAPSRSIS KSPAGIIQGM AHGTTSLFSS 
      3010       3020       3030       3040       3050
TIYALSDAAT QFSKAAHKGI VAFTFNDHDV ARMEKQQLGE GSRSKGVIGE 
      3060       3070       3080       3090       3100
VFEGLTGLLQ SPIRGAEKHG LPGVISGVAM GITGLVARPT ASILEVTGKT 
      3110       3120       3130       3140       3150
AQSIRNRSRI HNIRSQRHRL RLPRPLSREQ PLRPYSWEEA VGTAVLMEVG 
      3160       3170       3180       3190       3200
DSLKFKGEKL VKCKALKQEG AFVVITGRLV LVLSSLSLVD FRKQGFLGVP 
      3210       3220       3230       3240       3250
IDLVWNIERE IGLESVIHTD CSGGVVRIIG SNSDGVWNWR QDQQKKSSPT 
      3260       3270       3280       3290       3300
KKRWNNPSAQ PLLQTNLEFP SEEEAEDLLS VLLSTIETGK SRSWHSRFVL 

SRSNIT
Length:3,306
Mass (Da):368,489
Last modified:March 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i122B0D048E6C1E99
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AL392145 Genomic DNA Translation: CAC08248.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL392145 Genomic DNA Translation: CAC08248.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Phylogenomic databases

PhylomeDBiQ9FT44

Gene expression databases

ExpressionAtlasiQ9FT44, baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR009543, SHR-BD
IPR026847, VPS13
IPR026854, VPS13-like_N
IPR031645, VPS13_C
IPR031642, VPS13_mid_rpt
IPR031646, VPS13_N2
PANTHERiPTHR16166, PTHR16166, 1 hit
PfamiView protein in Pfam
PF12624, Chorein_N, 1 hit
PF06650, SHR-BD, 1 hit
PF16908, VPS13, 1 hit
PF16909, VPS13_C, 1 hit
PF16910, VPS13_mid_rpt, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9FT44_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9FT44
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: December 2, 2020
This is version 100 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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