UniProtKB - Q9FT44 (Q9FT44_ARATH)
Protein
Submitted name:
VPS13-like protein
Gene
At5g24740
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Names & Taxonomyi
Protein namesi | Submitted name: VPS13-like proteinImported |
Gene namesi | Ordered Locus Names:At5g24740Imported |
Organismi | Arabidopsis thaliana (Mouse-ear cress)Imported |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 11 – 118 | Chorein_NInterPro annotationAdd BLAST | 108 | |
Domaini | 144 – 232 | VPS13InterPro annotationAdd BLAST | 89 | |
Domaini | 451 – 671 | VPS13_mid_rptInterPro annotationAdd BLAST | 221 | |
Domaini | 2298 – 2543 | SHR-BDInterPro annotationAdd BLAST | 246 | |
Domaini | 2860 – 3027 | VPS13_CInterPro annotationAdd BLAST | 168 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 276 – 300 | DisorderedSequence analysisAdd BLAST | 25 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 282 – 296 | PolyampholyteSequence analysisAdd BLAST | 15 |
Sequence similaritiesi
Belongs to the VPS13 family.ARBA annotation
Phylogenomic databases
PhylomeDBi | Q9FT44 |
Family and domain databases
InterProi | View protein in InterPro IPR009543, SHR-BD IPR026847, VPS13 IPR026854, VPS13-like_N IPR031645, VPS13_C IPR031642, VPS13_mid_rpt IPR031646, VPS13_N2 |
PANTHERi | PTHR16166, PTHR16166, 1 hit |
Pfami | View protein in Pfam PF12624, Chorein_N, 1 hit PF06650, SHR-BD, 1 hit PF16908, VPS13, 1 hit PF16909, VPS13_C, 1 hit PF16910, VPS13_mid_rpt, 1 hit |
i Sequence
Sequence statusi: Complete.
Q9FT44-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MLEGYVQGFV NLLLGYLGRY IKDIQKDQLK ISLWNGEVLL ENVELNPEAF
60 70 80 90 100
EYLQLPIALK QGRVGKLSIK IPWKKLHRDP VTIMIEDVFI CASQRNDQEW
110 120 130 140 150
SSDVVEKREF AGKKAKLASA ELAKLSRRVF DNPGGNSYMS YITAKVNRSG
160 170 180 190 200
ELYDDLPQYS ISAELTDVVV TLNEFQLQQI LILLDYLQTS QLRERYGRYR
210 220 230 240 250
PCSTSLSRKP PGWQKLWWHY AQNSVLSDSI DKSIRLGLEE LEKKSDIDDI
260 270 280 290 300
LSYRSAAEGE MQEACSELTV NMGATGATRS EKEQSAPEKE PSDDPTLNKS
310 320 330 340 350
RGWLNWLSRG MLGAGGTEDS SQFSGVVSDE VVKDIHKATK FYPLSSSPRN
360 370 380 390 400
TSATGKICTC SIRLNVRKFS ATLQHISGSS SQVITELDIL GVIVECKSWK
410 420 430 440 450
DSTAMILSVI SGRLVYPHNG KEILTMKRVC SQSDTLETKP SYGARLELSK
460 470 480 490 500
DHDVALSLKA TLQPLEAAYD GGFILAVSNF FSGSRYFKLQ HERILSSLNG
510 520 530 540 550
LESETRLAAK AEYLLSSRNK VKWDLDIKDL TLSFPGRLVE SESYNLVLVL
560 570 580 590 600
ESLSITSSST DALSQIPRLQ SDVDHVVNSL QSSVEALDAF QVKDLYDHFD
610 620 630 640 650
IKICNLEMKL MKIHPFQELP LVEKSSLLIK FASCIIPEES ILKQLEVEAT
660 670 680 690 700
LPMFNVHFSP SIFKGVMSVI EYLDIQDHGT RNPPPSPAPI FHFTIKTDLA
710 720 730 740 750
FLRLHVNLEN KGENSTVLVL SIQQLDLWYS RAIFEEWSVR AKTLEITACS
760 770 780 790 800
SKDAADSHIL CSSGNLLKSS SHGHGMDAHT SDETNIIDYR TTPEAAISLN
810 820 830 840 850
CKVSQTSYKI SSSYTNPSSL ATDTIAPTEI PQFDFERFGF SNFTESRSCG
860 870 880 890 900
CIPLDKFPFV TINNSGSLHS LESSLCYSTS DWRKLFILKN RKDGAQIGLN
910 920 930 940 950
CECNSCTFQL KRDCPLNGLA SSRDLGQTNH FTVDMHVFNT NVHFHDSSSV
960 970 980 990 1000
FGTIILPVSR YFLNISDDLL DLVASAEDLM LVSSLFTNYS GGFLWKQSST
1010 1020 1030 1040 1050
DVSQVLNLRV RKRGLEPSGS QLEVSIGIQH TYCILPPEYL AIIIGYFSLS
1060 1070 1080 1090 1100
DWTSKSGLQS LPQATELTKA HSEFAISYKI EILDSSIVLP VEGDDRRQLK
1110 1120 1130 1140 1150
VDIQQLYISF IPECALSNVV QHIPQECVIP LNQVLGRADC LNIFGRDLSV
1160 1170 1180 1190 1200
SLLLSESDIS TFKKNAVCRS ITLAASIIAD TWIRFPCDHN PLTELACVMS
1210 1220 1230 1240 1250
RVDVCEIVVD DALDGFKAFL DVVDQLSLVD EESKLFVSDV PQFLHTKMRL
1260 1270 1280 1290 1300
KQELSVAPLE PSTSFIKFRI FVNLLTSKLH RLRKAPGTLL SEPVLQADMK
1310 1320 1330 1340 1350
FVCSGELKNN FPMSLDVQFF KIGLYSLLSS VMLARCINAD GDPSALRVRF
1360 1370 1380 1390 1400
TEQAENEYDL CFSLPSLDIW LHFFDWIEVI ELLKSYSQKL EDSSEDRFFS
1410 1420 1430 1440 1450
KGSKLDMDES IGVVRTICDN TDRVLNVLQT EVSENSSEVM SFAARSENIG
1460 1470 1480 1490 1500
VKIHIPLCTS HTEFPGFMAT DVHEISEEEH TNCFKGNYCK YVSVTACSRS
1510 1520 1530 1540 1550
GELSILGRDV KLSYKIEKLN GILAISGVDT VRSCSLFGAA QLLVETSIQM
1560 1570 1580 1590 1600
DQNKIMSIDV GILSDKVEMH ASHQVLSFWH GITFDAPETP SSQNSEGNMS
1610 1620 1630 1640 1650
IKVQIRDVSL LISDGKWGCS GMLLEVLMRN FLLQANLAEK NMESLVSCDL
1660 1670 1680 1690 1700
EVNYNNMHKV LWEPFIEPWN FDIKLSRKFD ANSLLNNAGL TEVIVASSNQ
1710 1720 1730 1740 1750
LNLNLTESLF ECIFRIIEML NILELMETDA IPDNKGLSVY CTNSTRTERY
1760 1770 1780 1790 1800
SPYVLQNLTS LPLGYQVFQG HDSDVLNISA PVAQNFVQPG CSVPIYIDNS
1810 1820 1830 1840 1850
DTLLIPDRRR SQFGCSSSES GDAIHHYMKV QLDGTSFASP PHSMDRIGLS
1860 1870 1880 1890 1900
YFEVDFSKTS NSSDNVEKAS KSGYGSSFVV PVVYEVSLQQ QSKLIRVYST
1910 1920 1930 1940 1950
VIILNSTSMP LELRFDIPFG ISPKLPYLVD LNTIFYYSYA ILFQILDPIF
1960 1970 1980 1990 2000
PGQEFPLPLH LAKSGRLRWR PLGDSYLWSE AHSISKVLSQ DSGIGFRRSF
2010 2020 2030 2040 2050
ACYPCHPSHE PFRCCISVQS TSLPASFHIN DLSAGNFGQQ LHNLDQSREQ
2060 2070 2080 2090 2100
FIHQVTLSTP FVVSNCLPDP ISLSIESGGI TQTASLPETP FHHIDPSHDL
2110 2120 2130 2140 2150
VLEFKLNGCR TSSLKFSRSE TFSTEAKFSG GKFSQIETIS FDSHVGGGSV
2160 2170 2180 2190 2200
YVSCEKTMDA TCGAREVLIF VPFLLYNCTG TPLIVSDCTN ETKGIYSVIP
2210 2220 2230 2240 2250
SCYNLIEQHF VQSRKVGLGI LTSEKDLLDK AVMEDIPCSP SSSECSNTAS
2260 2270 2280 2290 2300
STERFIDKHA TQSTRQVPFA AYPKDSAIVR KRSLSSKSLR EVCFQGNDES
2310 2320 2330 2340 2350
GKVKACIYSP CPISRVSDTM IRVKRDLPGW VNSSSPYPLW SAPFPLVPPS
2360 2370 2380 2390 2400
GSTNVVVPQP SPGESSLLSV TCSILGGALA GRTQAITFQP SHNLCYKQKG
2410 2420 2430 2440 2450
TNLVSHLAVG QHSQLQWTDT TRELLVSIRL NEPGWQWSGS FLPDHLGDTQ
2460 2470 2480 2490 2500
LKIWNYVNKA FNMVRVEVQN ANMSSGDEKI VGSVHGHVGT NFILLSDDDM
2510 2520 2530 2540 2550
GYMPYRIDNF SNERLRVYQQ KCETFDTIVH PYTSCPYAWD EPCYPHRLTI
2560 2570 2580 2590 2600
EVPGDRVLGS YAFEITKQPI AVHLRSTSEK PERTLLLSIC AEGATKVFSV
2610 2620 2630 2640 2650
VDSGYHAIKD IKETFDSRFH EKGKKKLQTD NIIRYTETFL LVLPSIGISL
2660 2670 2680 2690 2700
VNSHPQELVY ACASNVVLEL SQSVDQQKLS FQISSLQIDN PLQNSSYPVI
2710 2720 2730 2740 2750
LSFNHDHEVI PPDWGMKNNK AILLSEIVQQ VRGNSCDAVV YVDLAKWRKK
2760 2770 2780 2790 2800
DVSLVSFEYI NIRIGEFGLE LELQTLLSLL EFVKAVLPNS QARLLPLSDP
2810 2820 2830 2840 2850
TLRPLIYDTG SKDISSEDTP HARNIPVFNK NQRSIVALPI VVPIGAPWQH
2860 2870 2880 2890 2900
IHLLARRRRK IYVETFDLAP IQFTLSFCSA PWMLRNGILT SGESLIHRGL
2910 2920 2930 2940 2950
MALADVEGAR IHLKQLTIAH QITSWESFQE ILVGHYTRQI LHEIYKVFGS
2960 2970 2980 2990 3000
AGVIGNPMGF ARNVAFGIKD FLSAPSRSIS KSPAGIIQGM AHGTTSLFSS
3010 3020 3030 3040 3050
TIYALSDAAT QFSKAAHKGI VAFTFNDHDV ARMEKQQLGE GSRSKGVIGE
3060 3070 3080 3090 3100
VFEGLTGLLQ SPIRGAEKHG LPGVISGVAM GITGLVARPT ASILEVTGKT
3110 3120 3130 3140 3150
AQSIRNRSRI HNIRSQRHRL RLPRPLSREQ PLRPYSWEEA VGTAVLMEVG
3160 3170 3180 3190 3200
DSLKFKGEKL VKCKALKQEG AFVVITGRLV LVLSSLSLVD FRKQGFLGVP
3210 3220 3230 3240 3250
IDLVWNIERE IGLESVIHTD CSGGVVRIIG SNSDGVWNWR QDQQKKSSPT
3260 3270 3280 3290 3300
KKRWNNPSAQ PLLQTNLEFP SEEEAEDLLS VLLSTIETGK SRSWHSRFVL
SRSNIT
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AL392145 Genomic DNA Translation: CAC08248.1 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AL392145 Genomic DNA Translation: CAC08248.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Phylogenomic databases
PhylomeDBi | Q9FT44 |
Gene expression databases
ExpressionAtlasi | Q9FT44, baseline and differential |
Family and domain databases
InterProi | View protein in InterPro IPR009543, SHR-BD IPR026847, VPS13 IPR026854, VPS13-like_N IPR031645, VPS13_C IPR031642, VPS13_mid_rpt IPR031646, VPS13_N2 |
PANTHERi | PTHR16166, PTHR16166, 1 hit |
Pfami | View protein in Pfam PF12624, Chorein_N, 1 hit PF06650, SHR-BD, 1 hit PF16908, VPS13, 1 hit PF16909, VPS13_C, 1 hit PF16910, VPS13_mid_rpt, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | Q9FT44_ARATH | |
Accessioni | Q9FT44Primary (citable) accession number: Q9FT44 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | March 1, 2001 |
Last sequence update: | March 1, 2001 | |
Last modified: | December 2, 2020 | |
This is version 100 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |