UniProtKB - Q9FRI5 (PPR57_ARATH)
Protein
Pentatricopeptide repeat-containing protein At1g25360
Gene
PCMP-H74
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Functioni
GO - Molecular functioni
- RNA binding Source: GO_Central
- zinc ion binding Source: InterPro
GO - Biological processi
- RNA modification Source: GO_Central
Names & Taxonomyi
Protein namesi | Recommended name: Pentatricopeptide repeat-containing protein At1g25360 |
Gene namesi | Name:PCMP-H74 Ordered Locus Names:At1g25360 ORF Names:F4F7.25 |
Organismi | Arabidopsis thaliana (Mouse-ear cress) |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT1G25360 |
TAIRi | locus:2032955, AT1G25360 |
Subcellular locationi
Other locations
- intracellular membrane-bounded organelle Source: GO_Central
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000342798 | 1 – 790 | Pentatricopeptide repeat-containing protein At1g25360Add BLAST | 790 |
Proteomic databases
PaxDbi | Q9FRI5 |
PRIDEi | Q9FRI5 |
ProteomicsDBi | 234862 |
PTM databases
iPTMneti | Q9FRI5 |
Expressioni
Gene expression databases
ExpressionAtlasi | Q9FRI5, baseline and differential |
Genevisiblei | Q9FRI5, AT |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Repeati | 48 – 82 | PPR 1Add BLAST | 35 | |
Repeati | 84 – 109 | PPR 2Add BLAST | 26 | |
Repeati | 112 – 146 | PPR 3Add BLAST | 35 | |
Repeati | 147 – 182 | PPR 4Add BLAST | 36 | |
Repeati | 183 – 217 | PPR 5Add BLAST | 35 | |
Repeati | 218 – 248 | PPR 6Add BLAST | 31 | |
Repeati | 250 – 284 | PPR 7Add BLAST | 35 | |
Repeati | 285 – 315 | PPR 8Add BLAST | 31 | |
Repeati | 319 – 349 | PPR 9Add BLAST | 31 | |
Repeati | 350 – 384 | PPR 10Add BLAST | 35 | |
Repeati | 385 – 415 | PPR 11Add BLAST | 31 | |
Repeati | 416 – 450 | PPR 12Add BLAST | 35 | |
Repeati | 451 – 481 | PPR 13Add BLAST | 31 | |
Repeati | 482 – 516 | PPR 14Add BLAST | 35 | |
Repeati | 517 – 551 | PPR 15Add BLAST | 35 | |
Repeati | 553 – 583 | PPR 16Add BLAST | 31 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 588 – 663 | Type E motifAdd BLAST | 76 | |
Regioni | 664 – 694 | Type E(+) motifAdd BLAST | 31 | |
Regioni | 695 – 790 | Type DYW motifAdd BLAST | 96 |
Sequence similaritiesi
Keywords - Domaini
RepeatPhylogenomic databases
eggNOGi | KOG4197, Eukaryota |
HOGENOMi | CLU_002706_15_1_1 |
InParanoidi | Q9FRI5 |
OMAi | TPSIWEA |
OrthoDBi | 1344243at2759 |
PhylomeDBi | Q9FRI5 |
Family and domain databases
Gene3Di | 1.25.40.10, 5 hits |
InterProi | View protein in InterPro IPR032867, DYW_dom IPR002885, Pentatricopeptide_repeat IPR011990, TPR-like_helical_dom_sf |
Pfami | View protein in Pfam PF14432, DYW_deaminase, 1 hit PF01535, PPR, 8 hits PF13041, PPR_2, 3 hits |
SUPFAMi | SSF48452, SSF48452, 1 hit |
TIGRFAMsi | TIGR00756, PPR, 7 hits |
PROSITEi | View protein in PROSITE PS51375, PPR, 13 hits |
i Sequence
Sequence statusi: Complete.
Q9FRI5-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MQPNPDLVRA IANRYAANLR LCLPLRRTSL QLARAVHGNI ITFGFQPRAH
60 70 80 90 100
ILNRLIDVYC KSSELNYARQ LFDEISEPDK IARTTMVSGY CASGDITLAR
110 120 130 140 150
GVFEKAPVCM RDTVMYNAMI TGFSHNNDGY SAINLFCKMK HEGFKPDNFT
160 170 180 190 200
FASVLAGLAL VADDEKQCVQ FHAAALKSGA GYITSVSNAL VSVYSKCASS
210 220 230 240 250
PSLLHSARKV FDEILEKDER SWTTMMTGYV KNGYFDLGEE LLEGMDDNMK
260 270 280 290 300
LVAYNAMISG YVNRGFYQEA LEMVRRMVSS GIELDEFTYP SVIRACATAG
310 320 330 340 350
LLQLGKQVHA YVLRREDFSF HFDNSLVSLY YKCGKFDEAR AIFEKMPAKD
360 370 380 390 400
LVSWNALLSG YVSSGHIGEA KLIFKEMKEK NILSWMIMIS GLAENGFGEE
410 420 430 440 450
GLKLFSCMKR EGFEPCDYAF SGAIKSCAVL GAYCNGQQYH AQLLKIGFDS
460 470 480 490 500
SLSAGNALIT MYAKCGVVEE ARQVFRTMPC LDSVSWNALI AALGQHGHGA
510 520 530 540 550
EAVDVYEEML KKGIRPDRIT LLTVLTACSH AGLVDQGRKY FDSMETVYRI
560 570 580 590 600
PPGADHYARL IDLLCRSGKF SDAESVIESL PFKPTAEIWE ALLSGCRVHG
610 620 630 640 650
NMELGIIAAD KLFGLIPEHD GTYMLLSNMH AATGQWEEVA RVRKLMRDRG
660 670 680 690 700
VKKEVACSWI EMETQVHTFL VDDTSHPEAE AVYIYLQDLG KEMRRLGYVP
710 720 730 740 750
DTSFVLHDVE SDGHKEDMLT THSEKIAVAF GLMKLPPGTT IRIFKNLRTC
760 770 780 790
GDCHNFFRFL SWVVQRDIIL RDRKRFHHFR NGECSCGNFW
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC079374 Genomic DNA Translation: AAG28801.1 CP002684 Genomic DNA Translation: AEE30612.1 |
PIRi | E86383 |
RefSeqi | NP_173907.1, NM_102346.2 |
Genome annotation databases
EnsemblPlantsi | AT1G25360.1; AT1G25360.1; AT1G25360 |
GeneIDi | 839121 |
Gramenei | AT1G25360.1; AT1G25360.1; AT1G25360 |
KEGGi | ath:AT1G25360 |
Similar proteinsi
Cross-referencesi
Web resourcesi
Pentatricopeptide repeat proteins |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC079374 Genomic DNA Translation: AAG28801.1 CP002684 Genomic DNA Translation: AEE30612.1 |
PIRi | E86383 |
RefSeqi | NP_173907.1, NM_102346.2 |
3D structure databases
SMRi | Q9FRI5 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 3702.AT1G25360.1 |
PTM databases
iPTMneti | Q9FRI5 |
Proteomic databases
PaxDbi | Q9FRI5 |
PRIDEi | Q9FRI5 |
ProteomicsDBi | 234862 |
Genome annotation databases
EnsemblPlantsi | AT1G25360.1; AT1G25360.1; AT1G25360 |
GeneIDi | 839121 |
Gramenei | AT1G25360.1; AT1G25360.1; AT1G25360 |
KEGGi | ath:AT1G25360 |
Organism-specific databases
Araporti | AT1G25360 |
TAIRi | locus:2032955, AT1G25360 |
Phylogenomic databases
eggNOGi | KOG4197, Eukaryota |
HOGENOMi | CLU_002706_15_1_1 |
InParanoidi | Q9FRI5 |
OMAi | TPSIWEA |
OrthoDBi | 1344243at2759 |
PhylomeDBi | Q9FRI5 |
Miscellaneous databases
PROi | PR:Q9FRI5 |
Gene expression databases
ExpressionAtlasi | Q9FRI5, baseline and differential |
Genevisiblei | Q9FRI5, AT |
Family and domain databases
Gene3Di | 1.25.40.10, 5 hits |
InterProi | View protein in InterPro IPR032867, DYW_dom IPR002885, Pentatricopeptide_repeat IPR011990, TPR-like_helical_dom_sf |
Pfami | View protein in Pfam PF14432, DYW_deaminase, 1 hit PF01535, PPR, 8 hits PF13041, PPR_2, 3 hits |
SUPFAMi | SSF48452, SSF48452, 1 hit |
TIGRFAMsi | TIGR00756, PPR, 7 hits |
PROSITEi | View protein in PROSITE PS51375, PPR, 13 hits |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | PPR57_ARATH | |
Accessioni | Q9FRI5Primary (citable) accession number: Q9FRI5 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | July 1, 2008 |
Last sequence update: | March 1, 2001 | |
Last modified: | December 2, 2020 | |
This is version 107 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Arabidopsis thaliana
Arabidopsis thaliana: entries and gene names - SIMILARITY comments
Index of protein domains and families