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Entry version 109 (31 Jul 2019)
Sequence version 1 (01 Mar 2001)
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Protein
Submitted name:

Gb|AAC80581.1

Gene
N/A
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Gb|AAC80581.1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9FNI5 baseline and differential

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini186 – 246DDTInterPro annotationAdd BLAST61
Domaini413 – 460PHD-typeInterPro annotationAdd BLAST48

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 27DisorderedSequence analysisAdd BLAST27
Regioni564 – 585DisorderedSequence analysisAdd BLAST22
Regioni841 – 864DisorderedSequence analysisAdd BLAST24
Regioni1268 – 1301DisorderedSequence analysisAdd BLAST34

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1 – 24PolyampholyteSequence analysisAdd BLAST24

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1473 Eukaryota
COG5076 LUCA

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9FNI5

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.30.40.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR018501 DDT_dom
IPR018247 EF_Hand_1_Ca_BS
IPR028942 WHIM1_dom
IPR019786 Zinc_finger_PHD-type_CS
IPR011011 Znf_FYVE_PHD
IPR001965 Znf_PHD
IPR019787 Znf_PHD-finger
IPR013083 Znf_RING/FYVE/PHD

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02791 DDT, 1 hit
PF00628 PHD, 1 hit
PF15612 WHIM1, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00571 DDT, 1 hit
SM00249 PHD, 3 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF57903 SSF57903, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50827 DDT, 1 hit
PS00018 EF_HAND_1, 1 hit
PS01359 ZF_PHD_1, 1 hit
PS50016 ZF_PHD_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9FNI5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEGKVAKPRG RPRKRPRPED LNGVSNRGKR PVFEVKVAVP RSLLGRYVLK
60 70 80 90 100
DVDDSGVFLG KIVSYNTGLY RVEYEDGDFE DLETCYLRQL IIGDSYFDDE
110 120 130 140 150
LRARRSKLDD FILKKDEKKK TDCLKNKGVE VPTCNSPSSV AEVESGYSSC
160 170 180 190 200
GLPECEDDID PDFESMSPLV PPVELPSSSG TIGIPEEAVV YLLSVYGFLR
210 220 230 240 250
SFSVQLYICP FGLDDFVGAL NFLGPNSLLD AVHVALMRAL KGHLERLSSE
260 270 280 290 300
GSEVASKCLR CIDWSLLDAL TWPVYLVQYF AAMGHASGPL WRFFNEFVVE
310 320 330 340 350
KEYCSSPVVM KLKILQILCD DVFDVADLRA EIDNREESEV GFDTDGVTAE
360 370 380 390 400
LPENGPRRVH PRFAKTSASK EKELSEFVAV NHGISSLSDS KNWSSRYTDG
410 420 430 440 450
GPNGDSPDLD ANSDECRLCG MDGTLLCCDG CPLAYHSRCI GVVKMYIPDG
460 470 480 490 500
PWYCPECTIK KMGPTVVYKT SLRGAVYFGV DPHGRLFLGT CNLLLVLKIN
510 520 530 540 550
VHADADIKYY NVTDIPKVVL VLLSATNHRL EYLYICKAIS QYWDLPGGVI
560 570 580 590 600
SYLRTVETDL SHMQKEGGDE VSDIGEPDSA NSSSGNLIQN AVRLHPSASG
610 620 630 640 650
YTGGPVLARS SGAQEKNLVA VSTQKGLSFK PHSYINHYTN GELAASAAAT
660 670 680 690 700
LAILMSEETH EPDLHKFSNA KKAASSNILL QMKAFSIVAS SFFWPSPDKK
710 720 730 740 750
EITRERCGWC HSCKLTSASR RGCMLNAAVT GATKSAMKIY SGLFPLKNGE
760 770 780 790 800
GVLSRIAAYA LYLEESLRGL IAGPFLSESL RYQWRKKLEE ASTCKAMKAL
810 820 830 840 850
LLELEENICS IALSSDWLKL MDDWLIELSI FQSAPVTVGA TQKRRPGRRK
860 870 880 890 900
QRNQAENTAQ GSDDDSFTWW RGGKLSKIIL LKAVLSKPKI KKAAWQGGTK
910 920 930 940 950
KFPEFNYGDG SYIPKRSRRS IWKAAVESSK NISQLALQVR YLDMNIRWSE
960 970 980 990 1000
LVRPEQNVQD VKGPETEATI FRNASICVKK IIDNKVRYGV VFGNQKHLPS
1010 1020 1030 1040 1050
RVMKNVIEVE KSEDRNEKYW FHEARVPLYL IKEYEESLHR VVHIPFIKKP
1060 1070 1080 1090 1100
SRKISKLQKR QLKASRANIF SYLASRRDNT EKCSCASCHL DVFLRQPTTP
1110 1120 1130 1140 1150
SVLINGQLQN AATSNTKTQI KRLNQQLPSS KTGDNASGVK QITPDFNLAP
1160 1170 1180 1190 1200
KSKHKTLSWG VIWRKKNLAD TGVSFRHENV MLAGRSDQPN LQPVCWICKL
1210 1220 1230 1240 1250
PYNPGLTYIH CTSCDMWYHI EAVKLEESKI PEVVGFKCCR CRRIRSPDCP
1260 1270 1280 1290 1300
YMDPKLKEQK QMKQVFFRRQ KHGQGNTGID SDSERMSEPK DSLPSTPSFL
1310 1320 1330 1340 1350
SEDTFVPEDD PLLVSVSKVE QITPNSLDVE WNEDGCVPGP QKLQVRRPVK
1360 1370 1380 1390 1400
REDTDGNNNL SYTEFTMHPE SMPVVKPEME PTFPVMEWDA SGNSNNMNEG
1410 1420 1430 1440 1450
ELMFDYEDME FEPQTYFSLT ELLTTDDSGQ CDGYGDDKDA SGITDNPNPQ
1460 1470 1480 1490 1500
VEAMEQCTSF LYENTIPCQI CKHVEPGPDL TCQTCNMTIH SHCSPWEEES
1510
TCIGGSWRCG RCREWL
Length:1,516
Mass (Da):170,013
Last modified:March 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iFFAAA8593BA93CEA
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AB006699 Genomic DNA Translation: BAB11682.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB006699 Genomic DNA Translation: BAB11682.1

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiKOG1473 Eukaryota
COG5076 LUCA
PhylomeDBiQ9FNI5

Gene expression databases

ExpressionAtlasiQ9FNI5 baseline and differential

Family and domain databases

Gene3Di3.30.40.10, 2 hits
InterProiView protein in InterPro
IPR018501 DDT_dom
IPR018247 EF_Hand_1_Ca_BS
IPR028942 WHIM1_dom
IPR019786 Zinc_finger_PHD-type_CS
IPR011011 Znf_FYVE_PHD
IPR001965 Znf_PHD
IPR019787 Znf_PHD-finger
IPR013083 Znf_RING/FYVE/PHD
PfamiView protein in Pfam
PF02791 DDT, 1 hit
PF00628 PHD, 1 hit
PF15612 WHIM1, 1 hit
SMARTiView protein in SMART
SM00571 DDT, 1 hit
SM00249 PHD, 3 hits
SUPFAMiSSF57903 SSF57903, 2 hits
PROSITEiView protein in PROSITE
PS50827 DDT, 1 hit
PS00018 EF_HAND_1, 1 hit
PS01359 ZF_PHD_1, 1 hit
PS50016 ZF_PHD_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9FNI5_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9FNI5
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: July 31, 2019
This is version 109 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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