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Entry version 125 (07 Apr 2021)
Sequence version 1 (01 Mar 2001)
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Protein

Sm-like protein LSM5

Gene

LSM5

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5'-3' mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splicing of selected development-related mRNAs through the stabilization of the spliceosomal U6 snRNA. Plays a critical role in the regulation of development-related gene expression (PubMed:23221597, PubMed:23620288).

Involved in the control of plant sensitivity to abscisic acid (ABA) and drought (PubMed:11740939).

Functions with ABH1 as negative regulator of ABA signaling in guard cells (PubMed:12427994).

Required for regulation of splicing efficiency of many stress-responsive genes under stress conditions (PubMed:24393432).

5 Publications

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • RNA binding Source: TAIR

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, RNA-binding
Biological processmRNA processing, mRNA splicing, Stress response

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Sm-like protein LSM5Curated
Short name:
AtLSM51 Publication
Alternative name(s):
Protein SUPERSENSITIVE TO ABA AND DROUGHT 11 Publication
Short name:
AtSAD11 Publication
U6 snRNA-associated Sm-like protein LSM5Curated
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:LSM51 Publication
Synonyms:SAD11 Publication
Ordered Locus Names:At5g48870Imported
ORF Names:K24G6.21Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

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Araporti
AT5G48870

The Arabidopsis Information Resource

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TAIRi
locus:2156589, AT5G48870

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Cytoplasm, Nucleus, Spliceosome

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Embryonic lethality when homozygous.1 Publication

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology%5Fand%5Fbiotech%5Fsection">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi12E → K in sad1; decreased germination rate, dwarf plants with round-shaped leaves and increased sensitivity to inhibition of seed germination and plant growth by exogenous ABA. 1 Publication1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM / Processing</a> section indicates that the initiator methionine is cleaved from the mature protein.<p><a href='/help/init_met' target='_top'>More...</a></p>Initiator methionineiRemovedCombined sources
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004316472 – 88Sm-like protein LSM5Add BLAST87

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei2N-acetylalanineCombined sources1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

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PaxDbi
Q9FKB0

PRoteomics IDEntifications database

More...
PRIDEi
Q9FKB0

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
238726

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

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iPTMneti
Q9FKB0

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in roots, leaves, stems, flowers and siliques.2 Publications

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9FKB0, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9FKB0, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Component of the heptameric LSM1-LSM7 complex that forms a seven-membered ring structure with a donut shape. The LSM subunits are arranged in the order LSM1, LSM2, LSM3, LSM6, LSM5, LSM7 and LSM4.

Component of the heptameric LSM2-LSM8 complex that forms a seven-membered ring structure with a donut shape. The LSM subunits are arranged in the order LSM8, LSM2, LSM3, LSM6, LSM5, LSM7 and LSM4 (PubMed:23221597, PubMed:23620288). LSM2 subunit interacts only with its two neighboring subunits, LSM6A or LSM6B and LSM7 (PubMed:23221597).

2 Publications

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction%5Fsection">Interaction</a>' section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="https://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated at every <a href="http://www.uniprot.org/help/synchronization">UniProt release</a>.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Hide details

Protein-protein interaction databases

ComplexPortal: manually curated resource of macromolecular complexes

More...
ComplexPortali
CPX-1308, LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6A-PAT1
CPX-1309, LSM2-8 complex, variant LSM3A-LSM6A
CPX-1345, LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6B-PAT1
CPX-1346, LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6A-PAT1
CPX-1347, LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6A-PAT1
CPX-1348, LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6A-PAT1
CPX-1349, LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6B-PAT1
CPX-1350, LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6B-PAT1
CPX-1351, LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6B-PAT1
CPX-1352, LSM2-8 complex, variant LSM3A-LSM6B
CPX-1353, LSM2-8 complex, variant LSM3B-LSM6A
CPX-1354, LSM2-8 complex, variant LSM3B-LSM6B
CPX-1391, LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6A-PAT1H1
CPX-1392, LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6B-PAT1H1
CPX-1393, LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6A-PAT1H1
CPX-1394, LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6B-PAT1H1
CPX-1395, LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6A-PAT1H1
CPX-1396, LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6B-PAT1H1
CPX-1397, LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6A-PAT1H1
CPX-1398, LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6B-PAT1H1
CPX-1399, LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6A-PAT1H2
CPX-1400, LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6B-PAT1H2
CPX-1401, LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6A-PAT1H2
CPX-1402, LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6B-PAT1H2
CPX-1403, LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6A-PAT1H2
CPX-1404, LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6B-PAT1H2
CPX-1405, LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6A-PAT1H2
CPX-1406, LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6B-PAT1H2

Protein interaction database and analysis system

More...
IntActi
Q9FKB0, 3 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT5G48870.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q9FKB0

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the snRNP Sm proteins family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
KOG1775, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
CLU_076902_6_1_1

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
Q9FKB0

Identification of Orthologs from Complete Genome Data

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OMAi
NGNNVCM

Database of Orthologous Groups

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OrthoDBi
1558822at2759

Database for complete collections of gene phylogenies

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PhylomeDBi
Q9FKB0

Family and domain databases

Conserved Domains Database

More...
CDDi
cd01732, LSm5, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR033871, LSm5
IPR001163, LSM_dom_euk/arc
IPR010920, LSM_dom_sf

The PANTHER Classification System

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PANTHERi
PTHR20971, PTHR20971, 1 hit

Pfam protein domain database

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Pfami
View protein in Pfam
PF01423, LSM, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

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SMARTi
View protein in SMART
SM00651, Sm, 1 hit

Superfamily database of structural and functional annotation

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SUPFAMi
SSF50182, SSF50182, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q9FKB0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MANNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGILKGFD VYVNMVLEDV
60 70 80
TEYEITAEGR RVTKLDQILL NGNNIAILVP GGSPEDGE
Length:88
Mass (Da):9,658
Last modified:March 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC85DCCDB73BFF661
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti86D → N in BAF01501 (Ref. 6) Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AY034896 mRNA Translation: AAK61592.1
JQ612715 Genomic DNA Translation: AFJ05005.1
AB012242 Genomic DNA Translation: BAB09440.1
CP002688 Genomic DNA Translation: AED95735.1
BT025700 mRNA Translation: ABF82603.1
AK229657 mRNA Translation: BAF01501.1

NCBI Reference Sequences

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RefSeqi
NP_199698.1, NM_124264.4

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT5G48870.1; AT5G48870.1; AT5G48870

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
834945

Gramene; a comparative resource for plants

More...
Gramenei
AT5G48870.1; AT5G48870.1; AT5G48870

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT5G48870

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY034896 mRNA Translation: AAK61592.1
JQ612715 Genomic DNA Translation: AFJ05005.1
AB012242 Genomic DNA Translation: BAB09440.1
CP002688 Genomic DNA Translation: AED95735.1
BT025700 mRNA Translation: ABF82603.1
AK229657 mRNA Translation: BAF01501.1
RefSeqiNP_199698.1, NM_124264.4

3D structure databases

SMRiQ9FKB0
ModBaseiSearch...

Protein-protein interaction databases

ComplexPortaliCPX-1308, LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6A-PAT1
CPX-1309, LSM2-8 complex, variant LSM3A-LSM6A
CPX-1345, LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6B-PAT1
CPX-1346, LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6A-PAT1
CPX-1347, LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6A-PAT1
CPX-1348, LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6A-PAT1
CPX-1349, LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6B-PAT1
CPX-1350, LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6B-PAT1
CPX-1351, LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6B-PAT1
CPX-1352, LSM2-8 complex, variant LSM3A-LSM6B
CPX-1353, LSM2-8 complex, variant LSM3B-LSM6A
CPX-1354, LSM2-8 complex, variant LSM3B-LSM6B
CPX-1391, LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6A-PAT1H1
CPX-1392, LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6B-PAT1H1
CPX-1393, LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6A-PAT1H1
CPX-1394, LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6B-PAT1H1
CPX-1395, LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6A-PAT1H1
CPX-1396, LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6B-PAT1H1
CPX-1397, LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6A-PAT1H1
CPX-1398, LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6B-PAT1H1
CPX-1399, LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6A-PAT1H2
CPX-1400, LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6B-PAT1H2
CPX-1401, LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6A-PAT1H2
CPX-1402, LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6B-PAT1H2
CPX-1403, LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6A-PAT1H2
CPX-1404, LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6B-PAT1H2
CPX-1405, LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6A-PAT1H2
CPX-1406, LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6B-PAT1H2
IntActiQ9FKB0, 3 interactors
STRINGi3702.AT5G48870.1

PTM databases

iPTMnetiQ9FKB0

Proteomic databases

PaxDbiQ9FKB0
PRIDEiQ9FKB0
ProteomicsDBi238726

Genome annotation databases

EnsemblPlantsiAT5G48870.1; AT5G48870.1; AT5G48870
GeneIDi834945
GrameneiAT5G48870.1; AT5G48870.1; AT5G48870
KEGGiath:AT5G48870

Organism-specific databases

AraportiAT5G48870
TAIRilocus:2156589, AT5G48870

Phylogenomic databases

eggNOGiKOG1775, Eukaryota
HOGENOMiCLU_076902_6_1_1
InParanoidiQ9FKB0
OMAiNGNNVCM
OrthoDBi1558822at2759
PhylomeDBiQ9FKB0

Miscellaneous databases

Protein Ontology

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PROi
PR:Q9FKB0

Gene expression databases

ExpressionAtlasiQ9FKB0, baseline and differential
GenevisibleiQ9FKB0, AT

Family and domain databases

CDDicd01732, LSm5, 1 hit
InterProiView protein in InterPro
IPR033871, LSm5
IPR001163, LSM_dom_euk/arc
IPR010920, LSM_dom_sf
PANTHERiPTHR20971, PTHR20971, 1 hit
PfamiView protein in Pfam
PF01423, LSM, 1 hit
SMARTiView protein in SMART
SM00651, Sm, 1 hit
SUPFAMiSSF50182, SSF50182, 1 hit

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiLSM5_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9FKB0
Secondary accession number(s): Q0WMZ9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 7, 2015
Last sequence update: March 1, 2001
Last modified: April 7, 2021
This is version 125 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
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