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Protein

Pentatricopeptide repeat-containing protein At5g50390, chloroplastic

Gene

PCMP-H58

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At5g50390, chloroplastic
Gene namesi
Name:PCMP-H58
Ordered Locus Names:At5g50390
ORF Names:MXI22.11
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G50390
TAIRilocus:2177537 AT5G50390

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 47ChloroplastSequence analysisAdd BLAST47
ChainiPRO_000036356448 – 701Pentatricopeptide repeat-containing protein At5g50390, chloroplasticAdd BLAST654

Proteomic databases

PaxDbiQ9FK33

Expressioni

Gene expression databases

ExpressionAtlasiQ9FK33 baseline and differential
GenevisibleiQ9FK33 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G50390.1

Structurei

3D structure databases

ProteinModelPortaliQ9FK33
SMRiQ9FK33
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati86 – 116PPR 1Add BLAST31
Repeati122 – 156PPR 2Add BLAST35
Repeati157 – 187PPR 3Add BLAST31
Repeati188 – 218PPR 4Add BLAST31
Repeati223 – 257PPR 5Add BLAST35
Repeati258 – 288PPR 6Add BLAST31
Repeati289 – 323PPR 7Add BLAST35
Repeati324 – 358PPR 8Add BLAST35
Repeati359 – 389PPR 9Add BLAST31
Repeati390 – 424PPR 10Add BLAST35
Repeati425 – 460PPR 11Add BLAST36
Repeati461 – 491PPR 12Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni496 – 571Type E motifAdd BLAST76
Regioni572 – 606Type E(+) motif; degenerateAdd BLAST35
Regioni607 – 701Type DYW motifAdd BLAST95

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9FK33
OMAiYVAEENE
OrthoDBiEOG0936035H
PhylomeDBiQ9FK33

Family and domain databases

Gene3Di1.25.40.10, 3 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 3 hits
PF13041 PPR_2, 2 hits
TIGRFAMsiTIGR00756 PPR, 5 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 12 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9FK33-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEIPLSRYQS IRLDEIRDSS SNPKVLTFPR KFSLRGRRWK NPFGRLSCSS
60 70 80 90 100
VVQGLKPKPK LKPEPIRIEV KESKDQILDD TQISKSGVTI CSQIEKLVLC
110 120 130 140 150
NRFREAFELF EILEIRCSFK VGVSTYDALV EACIRLKSIR CVKRVYGFMM
160 170 180 190 200
SNGFEPEQYM MNRILLMHVK CGMIIDARRL FDEIPERNLY SYYSIISGFV
210 220 230 240 250
NFGNYVEAFE LFKMMWEELS DCETHTFAVM LRASAGLGSI YVGKQLHVCA
260 270 280 290 300
LKLGVVDNTF VSCGLIDMYS KCGDIEDARC AFECMPEKTT VAWNNVIAGY
310 320 330 340 350
ALHGYSEEAL CLLYDMRDSG VSIDQFTLSI MIRISTKLAK LELTKQAHAS
360 370 380 390 400
LIRNGFESEI VANTALVDFY SKWGRVDTAR YVFDKLPRKN IISWNALMGG
410 420 430 440 450
YANHGRGTDA VKLFEKMIAA NVAPNHVTFL AVLSACAYSG LSEQGWEIFL
460 470 480 490 500
SMSEVHGIKP RAMHYACMIE LLGRDGLLDE AIAFIRRAPL KTTVNMWAAL
510 520 530 540 550
LNACRMQENL ELGRVVAEKL YGMGPEKLGN YVVMYNMYNS MGKTAEAAGV
560 570 580 590 600
LETLESKGLS MMPACTWVEV GDQTHSFLSG DRFDSYNETV KRQIYQKVDE
610 620 630 640 650
LMEEISEYGY SEEEQHLLPD VDEKEEERVG RYHSEKLAIA YGLVNTPEWN
660 670 680 690 700
PLQITQNHRI CKNCHKVVEF ISLVTGREMV VRDASRFHHF KEGKCSCGGY

W
Length:701
Mass (Da):79,765
Last modified:March 1, 2001 - v1
Checksum:iB45259E5892996EC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB012248 Genomic DNA Translation: BAB09458.1
CP002688 Genomic DNA Translation: AED95938.1
RefSeqiNP_199850.1, NM_124421.2
UniGeneiAt.65663

Genome annotation databases

EnsemblPlantsiAT5G50390.1; AT5G50390.1; AT5G50390
GeneIDi835107
GrameneiAT5G50390.1; AT5G50390.1; AT5G50390
KEGGiath:AT5G50390

Similar proteinsi

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB012248 Genomic DNA Translation: BAB09458.1
CP002688 Genomic DNA Translation: AED95938.1
RefSeqiNP_199850.1, NM_124421.2
UniGeneiAt.65663

3D structure databases

ProteinModelPortaliQ9FK33
SMRiQ9FK33
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G50390.1

Proteomic databases

PaxDbiQ9FK33

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G50390.1; AT5G50390.1; AT5G50390
GeneIDi835107
GrameneiAT5G50390.1; AT5G50390.1; AT5G50390
KEGGiath:AT5G50390

Organism-specific databases

AraportiAT5G50390
TAIRilocus:2177537 AT5G50390

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9FK33
OMAiYVAEENE
OrthoDBiEOG0936035H
PhylomeDBiQ9FK33

Miscellaneous databases

PROiPR:Q9FK33

Gene expression databases

ExpressionAtlasiQ9FK33 baseline and differential
GenevisibleiQ9FK33 AT

Family and domain databases

Gene3Di1.25.40.10, 3 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 3 hits
PF13041 PPR_2, 2 hits
TIGRFAMsiTIGR00756 PPR, 5 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 12 hits
ProtoNetiSearch...

Entry informationi

Entry nameiPP427_ARATH
AccessioniPrimary (citable) accession number: Q9FK33
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: March 1, 2001
Last modified: October 10, 2018
This is version 100 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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