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Protein

Transcription factor MYB53

Gene

MYB53

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Probable transcription factor.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi37 – 61H-T-H motifPROSITE-ProRule annotationAdd BLAST25
DNA bindingi89 – 112H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor MYB531 Publication
Alternative name(s):
Myb-related protein 531 Publication
Short name:
AtMYB531 Publication
Gene namesi
Name:MYB531 Publication
Ordered Locus Names:At5g65230Imported
ORF Names:MQN23.17Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G65230
TAIRilocus:2171845 AT5G65230

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004429251 – 310Transcription factor MYB53Add BLAST310

Proteomic databases

PaxDbiQ9FJP2

Expressioni

Tissue specificityi

Highly expressed in roots and at lower levels in leaves, stems and flowers.1 Publication

Inductioni

Induced by abscisic acid (ABA) and gravity in roots.1 Publication

Gene expression databases

ExpressionAtlasiQ9FJP2 baseline and differential

Interactioni

Subunit structurei

Interacts with FBX5.1 Publication

GO - Molecular functioni

Protein-protein interaction databases

STRINGi3702.AT5G65230.1

Structurei

3D structure databases

ProteinModelPortaliQ9FJP2
SMRiQ9FJP2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 61HTH myb-type 1PROSITE-ProRule annotationAdd BLAST53
Domaini62 – 116HTH myb-type 2PROSITE-ProRule annotationAdd BLAST55

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
HOGENOMiHOG000237600
InParanoidiQ9FJP2
KOiK09422
OMAiIWLHEPP
OrthoDBiEOG09360IJT
PhylomeDBiQ9FJP2

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits

Sequencei

Sequence statusi: Complete.

Q9FJP2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGRSPSSDET GLKKGPWLPE EDDKLINYIH KHGHSSWSAL PKLAGLNRCG
60 70 80 90 100
KSCRLRWTNY LRPDIKRGKF SAEEEETILN LHAVLGNKWS MIASHLPGRT
110 120 130 140 150
DNEIKNFWNT HLKKKLIQMG FDPMTHQPRT DDIFSSLSQL MSLSNLRGLV
160 170 180 190 200
DLQQQFPMED QALLNLQTEM AKLQLFQYLL QPSPAPMSIN NINPNILNLL
210 220 230 240 250
IKENSVTSNI DLGFLSSHLQ DFNNNNLPSL KTLDDNHFSQ NTSPIWLHEP
260 270 280 290 300
PSLNQTMLPT HDPCAQSVDG FGSNQASSSH DQEVAVTDSV DWPDHHLFDD
310
SMFPDISYQS
Length:310
Mass (Da):35,136
Last modified:March 1, 2001 - v1
Checksum:i9070DD86A4C2AF9D
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti224N → S in AAC83611 (PubMed:9839469).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY519646 mRNA Translation: AAS10116.1
AB013395 Genomic DNA Translation: BAB11659.1
CP002688 Genomic DNA Translation: AED98026.1
AF062889 mRNA Translation: AAC83611.1
PIRiT51661
RefSeqiNP_201326.1, NM_125921.3
UniGeneiAt.9295

Genome annotation databases

EnsemblPlantsiAT5G65230.1; AT5G65230.1; AT5G65230
GeneIDi836648
GrameneiAT5G65230.1; AT5G65230.1; AT5G65230
KEGGiath:AT5G65230

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY519646 mRNA Translation: AAS10116.1
AB013395 Genomic DNA Translation: BAB11659.1
CP002688 Genomic DNA Translation: AED98026.1
AF062889 mRNA Translation: AAC83611.1
PIRiT51661
RefSeqiNP_201326.1, NM_125921.3
UniGeneiAt.9295

3D structure databases

ProteinModelPortaliQ9FJP2
SMRiQ9FJP2
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G65230.1

Proteomic databases

PaxDbiQ9FJP2

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G65230.1; AT5G65230.1; AT5G65230
GeneIDi836648
GrameneiAT5G65230.1; AT5G65230.1; AT5G65230
KEGGiath:AT5G65230

Organism-specific databases

AraportiAT5G65230
TAIRilocus:2171845 AT5G65230

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
HOGENOMiHOG000237600
InParanoidiQ9FJP2
KOiK09422
OMAiIWLHEPP
OrthoDBiEOG09360IJT
PhylomeDBiQ9FJP2

Miscellaneous databases

PROiPR:Q9FJP2

Gene expression databases

ExpressionAtlasiQ9FJP2 baseline and differential

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiMYB53_ARATH
AccessioniPrimary (citable) accession number: Q9FJP2
Secondary accession number(s): Q9ZTD8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 31, 2018
Last sequence update: March 1, 2001
Last modified: October 10, 2018
This is version 143 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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