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UniProtKB - Q9FJ62 (GPDL4_ARATH)
Protein
Glycerophosphodiester phosphodiesterase GDPDL4
Gene
GDPDL4
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Functioni
Involved in primary cell wall organization. Required for the accumulation of crystalline cellulose.
1 PublicationCatalytic activityi
- EC:3.1.4.46By similarity
GO - Molecular functioni
- glycerophosphodiester phosphodiesterase activity Source: GO_Central
GO - Biological processi
- cell wall organization Source: UniProtKB-KW
- glycerol metabolic process Source: UniProtKB-KW
- lipid metabolic process Source: InterPro
Keywordsi
Molecular function | Hydrolase |
Biological process | Cell wall biogenesis/degradation, Glycerol metabolism |
Names & Taxonomyi
Protein namesi | Recommended name: Glycerophosphodiester phosphodiesterase GDPDL4Curated (EC:3.1.4.46By similarity)Alternative name(s): Glycerophosphodiester phosphodiesterase-like 41 Publication Short name: ATGDPDL41 Publication Glycerophosphodiesterase-like 11 Publication Protein SHV3-LIKE 11 Publication |
Gene namesi | Name:GDPDL41 Publication Synonyms:GPDL11 Publication, SVL11 Publication Ordered Locus Names:At5g55480 ORF Names:MTE17.19 |
Organismi | Arabidopsis thaliana (Mouse-ear cress) |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT5G55480 |
TAIRi | locus:2173977, AT5G55480 |
Subcellular locationi
Plasma membrane
- Cell membrane ; Single-pass type I membrane protein Sequence analysis
Plasma Membrane
- anchored component of plasma membrane Source: TAIR
- plasma membrane Source: TAIR
Other locations
- anchored component of membrane Source: TAIR
- integral component of membrane Source: UniProtKB-KW
- plasmodesma Source: TAIR
- plastid Source: TAIR
- secretory vesicle Source: TAIR
Topology
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Topological domaini | 36 – 745 | ExtracellularSequence analysisAdd BLAST | 710 | |
Transmembranei | 746 – 766 | HelicalSequence analysisAdd BLAST | 21 |
Keywords - Cellular componenti
Cell membrane, MembranePTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Signal peptidei | 1 – 35 | Sequence analysisAdd BLAST | 35 | |
ChainiPRO_0000012597 | 36 – 766 | Glycerophosphodiester phosphodiesterase GDPDL4Add BLAST | 731 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Glycosylationi | 105 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 192 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 248 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 257 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 314 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 358 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 429 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 494 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 507 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 534 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 547 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 654 | N-linked (GlcNAc...) asparagineSequence analysis | 1 |
Keywords - PTMi
GlycoproteinProteomic databases
PaxDbi | Q9FJ62 |
PRIDEi | Q9FJ62 |
ProteomicsDBi | 248469 |
Expressioni
Tissue specificityi
Expressed in roots, leaves, stems, flowers and siliques.2 Publications
Gene expression databases
ExpressionAtlasi | Q9FJ62, baseline and differential |
Genevisiblei | Q9FJ62, AT |
Interactioni
Protein-protein interaction databases
BioGRIDi | 20885, 5 interactors |
IntActi | Q9FJ62, 1 interactor |
STRINGi | 3702.AT5G55480.1 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 50 – 349 | GP-PDE 1Add BLAST | 300 | |
Domaini | 365 – 668 | GP-PDE 2Add BLAST | 304 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 704 – 743 | DisorderedSequence analysisAdd BLAST | 40 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 728 – 743 | Polar residuesSequence analysisAdd BLAST | 16 |
Sequence similaritiesi
Belongs to the glycerophosphoryl diester phosphodiesterase family.Curated
Keywords - Domaini
Repeat, Signal, Transmembrane, Transmembrane helixPhylogenomic databases
eggNOGi | KOG2258, Eukaryota |
HOGENOMi | CLU_010414_0_1_1 |
InParanoidi | Q9FJ62 |
OMAi | KQTYGSM |
OrthoDBi | 211520at2759 |
PhylomeDBi | Q9FJ62 |
Family and domain databases
Gene3Di | 3.20.20.190, 2 hits |
InterProi | View protein in InterPro IPR030395, GP_PDE_dom IPR017946, PLC-like_Pdiesterase_TIM-brl |
Pfami | View protein in Pfam PF03009, GDPD, 1 hit |
SUPFAMi | SSF51695, SSF51695, 2 hits |
PROSITEi | View protein in PROSITE PS51704, GP_PDE, 2 hits |
i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
Q9FJ62-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MINMRDNPTM HVLQASKFLF LALILIQLLS TQLFAQRSKS PWQTLTGDAP
60 70 80 90 100
LVIARGGFSG LLPDSSLDAY SFVSQTSVPG AVLWCDVQLT KDAIGLCFPD
110 120 130 140 150
VKMMNASNIQ DVYPKRKTSY LLNGVPTQDW FTIDFNFKDL TKVILKQGIL
160 170 180 190 200
SRSAAFDGNS YGISTVKDIS TQLKPEGFWL NVQHDAFYAQ HNLSMSSFLL
210 220 230 240 250
SISKTVIIDY LSSPEVNFFR NIGRRFGRNG PKFVFRFLEK DDVEVSTNQT
260 270 280 290 300
YGSLAGNLTF LKTFASGVLV PKSYIWPIES QYLLPRTSFV QDAHKAGLEV
310 320 330 340 350
YASGFGNDFD LAYNYSFDPL AEYLSFMDNG DFSVDGLLSD FPLTASSAVD
360 370 380 390 400
CFSHLGSNAS SQVDFLVISK NGASGDYPGC TDLAYTKAIK DGADVIDCSL
410 420 430 440 450
QMSSDGIPFC LSSINLGEST NVVQSPFRNR STTVPEIGSL PGIYSFSLAW
460 470 480 490 500
SEIQTLRPAI ENPYSREFTM FRNPRERSSG KFVSLSDFLN LAKNSSSLTG
510 520 530 540 550
VLISVENATY LREKQGLDAV KAVLDTLTEA GYSNKTTTTR VMIQSTNSSV
560 570 580 590 600
LIDFKKQSRY ETVYKVEETI RDILDTAIED IKKFADAVVI SKKSVFPTSE
610 620 630 640 650
SFTTGQTKLV ERLQKFQLPV YVEVFRNEFV SQPWDFFADA TVEINSHVTG
660 670 680 690 700
AGINGTITEF PLTAARYKRN SCLTRKDVPP YMIPVQPAGL LTIVSPASLP
710 720 730 740 750
PAEAPSPVFT DADVTEPPLP PVSARAPTTT PGPQSTGEKS PNGQTRVALS
760
LLLSAFATVF ASLLLL
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AB015479 Genomic DNA Translation: BAB08565.1 CP002688 Genomic DNA Translation: AED96633.1 BT015819 mRNA Translation: AAU94382.1 BT020207 mRNA Translation: AAV59273.1 |
RefSeqi | NP_200359.1, NM_124930.4 |
Genome annotation databases
EnsemblPlantsi | AT5G55480.1; AT5G55480.1; AT5G55480 |
GeneIDi | 835641 |
Gramenei | AT5G55480.1; AT5G55480.1; AT5G55480 |
KEGGi | ath:AT5G55480 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AB015479 Genomic DNA Translation: BAB08565.1 CP002688 Genomic DNA Translation: AED96633.1 BT015819 mRNA Translation: AAU94382.1 BT020207 mRNA Translation: AAV59273.1 |
RefSeqi | NP_200359.1, NM_124930.4 |
3D structure databases
SMRi | Q9FJ62 |
ModBasei | Search... |
Protein-protein interaction databases
BioGRIDi | 20885, 5 interactors |
IntActi | Q9FJ62, 1 interactor |
STRINGi | 3702.AT5G55480.1 |
Proteomic databases
PaxDbi | Q9FJ62 |
PRIDEi | Q9FJ62 |
ProteomicsDBi | 248469 |
Genome annotation databases
EnsemblPlantsi | AT5G55480.1; AT5G55480.1; AT5G55480 |
GeneIDi | 835641 |
Gramenei | AT5G55480.1; AT5G55480.1; AT5G55480 |
KEGGi | ath:AT5G55480 |
Organism-specific databases
Araporti | AT5G55480 |
TAIRi | locus:2173977, AT5G55480 |
Phylogenomic databases
eggNOGi | KOG2258, Eukaryota |
HOGENOMi | CLU_010414_0_1_1 |
InParanoidi | Q9FJ62 |
OMAi | KQTYGSM |
OrthoDBi | 211520at2759 |
PhylomeDBi | Q9FJ62 |
Miscellaneous databases
PROi | PR:Q9FJ62 |
Gene expression databases
ExpressionAtlasi | Q9FJ62, baseline and differential |
Genevisiblei | Q9FJ62, AT |
Family and domain databases
Gene3Di | 3.20.20.190, 2 hits |
InterProi | View protein in InterPro IPR030395, GP_PDE_dom IPR017946, PLC-like_Pdiesterase_TIM-brl |
Pfami | View protein in Pfam PF03009, GDPD, 1 hit |
SUPFAMi | SSF51695, SSF51695, 2 hits |
PROSITEi | View protein in PROSITE PS51704, GP_PDE, 2 hits |
MobiDBi | Search... |
Entry informationi
Entry namei | GPDL4_ARATH | |
Accessioni | Q9FJ62Primary (citable) accession number: Q9FJ62 Secondary accession number(s): Q5XEZ7 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | August 29, 2003 |
Last sequence update: | March 1, 2001 | |
Last modified: | February 23, 2022 | |
This is version 131 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Arabidopsis thaliana
Arabidopsis thaliana: entries and gene names - SIMILARITY comments
Index of protein domains and families