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Protein

Putative two-component response regulator-like APRR4

Gene

APRR4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'.By similarity

Caution

Lacks the phospho-accepting Asp (here Gln-94), present in the receiver domain, which is one of the conserved features of the two-component response regulators (ARRs) family.Curated

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi225 – 275Myb-like GARPAdd BLAST51

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • DNA-binding transcription factor activity Source: TAIR

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation, Two-component regulatory system

Names & Taxonomyi

Protein namesi
Recommended name:
Putative two-component response regulator-like APRR4
Alternative name(s):
Pseudo-response regulator 4
Gene namesi
Name:APRR4
Ordered Locus Names:At5g49240
ORF Names:K21P3.12
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G49240
TAIRilocus:2155954 AT5G49240

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001323051 – 292Putative two-component response regulator-like APRR4Add BLAST292

Proteomic databases

PaxDbiQ9FJ16

Expressioni

Gene expression databases

ExpressionAtlasiQ9FJ16 differential
GenevisibleiQ9FJ16 AT

Interactioni

Subunit structurei

Binds the target DNA as a monomer.By similarity

Protein-protein interaction databases

STRINGi3702.AT5G49240.1

Structurei

3D structure databases

ProteinModelPortaliQ9FJ16
SMRiQ9FJ16
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini43 – 158Response regulatoryPROSITE-ProRule annotationAdd BLAST116

Sequence similaritiesi

Belongs to the ARR-like family.Curated

Phylogenomic databases

eggNOGiKOG1601 Eukaryota
COG5641 LUCA
HOGENOMiHOG000029456
InParanoidiQ9FJ16
KOiK14491
OMAiHNDRACA
OrthoDBiEOG09360MHH
PhylomeDBiQ9FJ16

Family and domain databases

CDDicd00156 REC, 1 hit
InterProiView protein in InterPro
IPR011006 CheY-like_superfamily
IPR009057 Homeobox-like_sf
IPR006447 Myb_dom_plants
IPR001789 Sig_transdc_resp-reg_receiver
PfamiView protein in Pfam
PF00072 Response_reg, 1 hit
SMARTiView protein in SMART
SM00448 REC, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
SSF52172 SSF52172, 1 hit
TIGRFAMsiTIGR01557 myb_SHAQKYF, 1 hit
PROSITEiView protein in PROSITE
PS50110 RESPONSE_REGULATORY, 1 hit

Sequencei

Sequence statusi: Complete.

Q9FJ16-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MQPLNMAEIL DHRGVLTDGD DGPFRNLTNF YDMFSSNFPE GLRVLVFDED
60 70 80 90 100
PSYLLILERH LQKFQYQVTI CNEVNKAMHT LRNHRNRFDL AMIQVNNAEG
110 120 130 140 150
DIFRFLSEIG SEMDLPIIII SEDDSVKSVK KWMINGAADY LIKPIRPEDL
160 170 180 190 200
RIVFKHLVKK MRERRSVVTG EAEKAAGEKS SSVGDSTIRN PNKSKRSSCL
210 220 230 240 250
EAEVNEEDRH DHNDRACASS AKKRRVVWDE ELHQNFLNAV DFLGLERAVP
260 270 280 290
KKILDVMKVD YISRENVASH LQVTFLIYNI IVHFQQHFCF YS
Length:292
Mass (Da):33,818
Last modified:March 1, 2001 - v1
Checksum:iAF025DBB1A0174D5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB016872 Genomic DNA Translation: BAB10342.1
CP002688 Genomic DNA Translation: AED95788.1
RefSeqiNP_199735.1, NM_124301.1
UniGeneiAt.55447

Genome annotation databases

EnsemblPlantsiAT5G49240.1; AT5G49240.1; AT5G49240
GeneIDi834984
GrameneiAT5G49240.1; AT5G49240.1; AT5G49240
KEGGiath:AT5G49240

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB016872 Genomic DNA Translation: BAB10342.1
CP002688 Genomic DNA Translation: AED95788.1
RefSeqiNP_199735.1, NM_124301.1
UniGeneiAt.55447

3D structure databases

ProteinModelPortaliQ9FJ16
SMRiQ9FJ16
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G49240.1

Proteomic databases

PaxDbiQ9FJ16

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G49240.1; AT5G49240.1; AT5G49240
GeneIDi834984
GrameneiAT5G49240.1; AT5G49240.1; AT5G49240
KEGGiath:AT5G49240

Organism-specific databases

AraportiAT5G49240
TAIRilocus:2155954 AT5G49240

Phylogenomic databases

eggNOGiKOG1601 Eukaryota
COG5641 LUCA
HOGENOMiHOG000029456
InParanoidiQ9FJ16
KOiK14491
OMAiHNDRACA
OrthoDBiEOG09360MHH
PhylomeDBiQ9FJ16

Miscellaneous databases

PROiPR:Q9FJ16

Gene expression databases

ExpressionAtlasiQ9FJ16 differential
GenevisibleiQ9FJ16 AT

Family and domain databases

CDDicd00156 REC, 1 hit
InterProiView protein in InterPro
IPR011006 CheY-like_superfamily
IPR009057 Homeobox-like_sf
IPR006447 Myb_dom_plants
IPR001789 Sig_transdc_resp-reg_receiver
PfamiView protein in Pfam
PF00072 Response_reg, 1 hit
SMARTiView protein in SMART
SM00448 REC, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
SSF52172 SSF52172, 1 hit
TIGRFAMsiTIGR01557 myb_SHAQKYF, 1 hit
PROSITEiView protein in PROSITE
PS50110 RESPONSE_REGULATORY, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiAPRR4_ARATH
AccessioniPrimary (citable) accession number: Q9FJ16
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 27, 2004
Last sequence update: March 1, 2001
Last modified: September 12, 2018
This is version 126 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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