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Protein
Submitted name:

WD-40 repeat protein-like

Gene
N/A
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
WD-40 repeat protein-likeImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
Q9FGX4

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

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ExpressionAtlasi
Q9FGX4 baseline and differential

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

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ProteinModelPortali
Q9FGX4

Database of comparative protein structure models

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ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini241 – 362WD_REPEATS_REGIONInterPro annotationAdd BLAST122
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati241 – 282WDPROSITE-ProRule annotationAdd BLAST42
Repeati283 – 324WDPROSITE-ProRule annotationAdd BLAST42
Domaini1509 – 1559BromoInterPro annotationAdd BLAST51

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

BromodomainPROSITE-ProRule annotationSAAS annotation, WD repeatPROSITE-ProRule annotation

Phylogenomic databases

Database for complete collections of gene phylogenies

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PhylomeDBi
Q9FGX4

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

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Gene3Di
1.20.920.10, 1 hit
2.130.10.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR001487 Bromodomain
IPR036427 Bromodomain-like_sf
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf

Pfam protein domain database

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Pfami
View protein in Pfam
PF00439 Bromodomain, 1 hit
PF00400 WD40, 3 hits

Simple Modular Architecture Research Tool; a protein domain database

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SMARTi
View protein in SMART
SM00297 BROMO, 1 hit
SM00320 WD40, 4 hits

Superfamily database of structural and functional annotation

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SUPFAMi
SSF47370 SSF47370, 1 hit
SSF50978 SSF50978, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50014 BROMODOMAIN_2, 1 hit
PS50082 WD_REPEATS_2, 2 hits
PS50294 WD_REPEATS_REGION, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9FGX4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MALRKNTPKG DSVSLPMKPL NFSRKLPGNV QIPDPDIVQS VAPNIDLDLR
60 70 80 90 100
EVYFLMLHLL SSGPCQKTYA LLRHELLEHE LLPRRYHAWY SRSGLPSGDE
110 120 130 140 150
NDDGNSFPLN YTELAKRYSH VKKDHLVELL KQLVFVSNRP NPSRGIGDGN
160 170 180 190 200
KMIGAGVPTL LGTGSFSLLS SDKEIVGSDL KPPPIGMRWP HMHADQVRGI
210 220 230 240 250
SLREIGGGFA RHHRAPSIRA ACYVIAKPSS MVQKMQNIKR LRGHRNAVYC
260 270 280 290 300
AILDRSGRYV ITGSDDRLVK VWSMDTAYCL ASCRGHEGDI TDLAVSSNNI
310 320 330 340 350
FIASASNDCV IRVWRLPDGL PVSVLRGHTG AVTAIAFSPR PGSSDDGTCR
360 370 380 390 400
IWDARGAQFA PRIYVPRPPS PDGDCFTFIV KLFCVDLLEA VWSANKTNTD
410 420 430 440 450
DPEQPNHEMD VLAGHENDVN YVQFSGCAAG SKFSVTDYSK DENVPKFKNS
460 470 480 490 500
WEKAADGHEH IISRFHLRPC PLNLLEGGHV KGSYLHPTYV MDVHPFNPRI
510 520 530 540 550
AMSAGYDGKT IVWDIWEGIP IQIYDISHYK LVDGKFSPDG TSIILSDDVG
560 570 580 590 600
QLYILSTGQG DSQKDAKYDQ FFLGDYRPLI QDTYGNVLDQ ESQLQPYRRN
610 620 630 640 650
MEDPLCDSGM IPYEEPYQTT FQKRRLGALG KEWRPSSLKL AVGPDITLDR
660 670 680 690 700
DYQMPPLADL DLAEPLPEFI DVMEWEPEVD ILSDENDSEY NVPEEYSSGK
710 720 730 740 750
EQECLNSSTS GESGSSSGES YEDDDHQNSL RRSKRKKHKK EAGIMTSSGR
760 770 780 790 800
RVKKRNFDEL EGAPSNKKRT RKSRSGRKES KRKSSKSKSS RPRRAAARNA
810 820 830 840 850
LSWFSKITGT SKDAEEEEVS ELSDSSESES TTQDSGTGDS ELEVALLNGH
860 870 880 890 900
GKQSKGKTIL VCDSDDGAQQ CDIRETHTAE RRRLVLRFPV RNSDKLTLLE
910 920 930 940 950
NLPGSSCDVP SPTLGNGCTE DSRIPGNQFE GLDVSKVKWG MVKARTTKRI
960 970 980 990 1000
RGEAISSHEL MGSDPEGKEN NVKEDSNHRG NGVTAPSCLE LKTDIDDMAV
1010 1020 1030 1040 1050
DTDTVISNGL PNGGKRYPEL DGSPSRVADD KASNSSQNVT HRHDLIDSLP
1060 1070 1080 1090 1100
PISTTLKIRS KRVSRAPDTS LRQEGKSLSI DQETGGSDAL NDGFEDAKCD
1110 1120 1130 1140 1150
LTLDCQKDGV VGTEISLRND CVLELNPQIC DALSIANDVP VSHSHPKRMF
1160 1170 1180 1190 1200
DFVYRRKSRK HKNNLDRDAA LTKEVSPGSC SQDHGSGSKS HEGASNGFHG
1210 1220 1230 1240 1250
TELNGLEKSE GSLTHIQDKI SDSRGNQNSQ EELRSASGAT LRLRSTRNRK
1260 1270 1280 1290 1300
STYPFSETKP IETKKPQQLI ENVSWLTLSI HEEGSRYIPQ MGDEVAYLRQ
1310 1320 1330 1340 1350
GHQEYLNFSS LREVAPWTSI KGGNIKAVEI CKVESLEYAT LPGSGDSCCK
1360 1370 1380 1390 1400
MILKVIDPNS EVFNKAFKLT LPEVVTFPDF LVERSRYEAA IQRNWTCRDK
1410 1420 1430 1440 1450
CKVWWRDEGE EDGSWWEGRI LAVKPKSPDF PDSPWERYTV KYKSDPAETH
1460 1470 1480 1490 1500
LHSPWELFDA DTKWEQPHID DEQRNRLLSA LTKLETSDKR TQDSFGLRKL
1510 1520 1530 1540 1550
NQTVGNSSYS NRFPVPLSLE VIRSRLENNY YRSVEALRHD VSVMLSNAET
1560 1570
FFGRNKSVAA KISNLSNWFD RTLPSS
Length:1,576
Mass (Da):176,018
Last modified:March 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD3992C4239B1A3D1
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AB023034 Genomic DNA Translation: BAB09913.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB023034 Genomic DNA Translation: BAB09913.1

3D structure databases

ProteinModelPortaliQ9FGX4
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ9FGX4

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

PhylomeDBiQ9FGX4

Gene expression databases

ExpressionAtlasiQ9FGX4 baseline and differential

Family and domain databases

Gene3Di1.20.920.10, 1 hit
2.130.10.10, 2 hits
InterProiView protein in InterPro
IPR001487 Bromodomain
IPR036427 Bromodomain-like_sf
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00439 Bromodomain, 1 hit
PF00400 WD40, 3 hits
SMARTiView protein in SMART
SM00297 BROMO, 1 hit
SM00320 WD40, 4 hits
SUPFAMiSSF47370 SSF47370, 1 hit
SSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50014 BROMODOMAIN_2, 1 hit
PS50082 WD_REPEATS_2, 2 hits
PS50294 WD_REPEATS_REGION, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9FGX4_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9FGX4
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: December 5, 2018
This is version 100 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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