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Protein

Ras-related protein RABA5a

Gene

RABA5A

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Intracellular vesicle trafficking and protein transport.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi21 – 28GTPBy similarity8
Nucleotide bindingi69 – 73GTPBy similarity5
Nucleotide bindingi127 – 130GTPBy similarity4
Nucleotide bindingi157 – 158GTPBy similarity2

GO - Molecular functioni

  • GTPase activity Source: GO_Central
  • GTP binding Source: UniProtKB-KW

GO - Biological processi

Keywordsi

Biological processProtein transport, Transport
LigandGTP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ras-related protein RABA5a
Short name:
AtRABA5a
Gene namesi
Name:RABA5A
Ordered Locus Names:At5g47520
ORF Names:MNJ7.11
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G47520
TAIRilocus:2169053 AT5G47520

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004073491 – 221Ras-related protein RABA5aAdd BLAST221

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi218S-geranylgeranyl cysteineBy similarity1
Lipidationi219S-geranylgeranyl cysteineBy similarity1

Keywords - PTMi

Lipoprotein, Prenylation

Proteomic databases

PaxDbiQ9FGK5
PRIDEiQ9FGK5

PTM databases

iPTMnetiQ9FGK5

Expressioni

Gene expression databases

ExpressionAtlasiQ9FGK5 baseline and differential
GenevisibleiQ9FGK5 AT

Interactioni

Protein-protein interaction databases

BioGridi20050, 2 interactors
IntActiQ9FGK5, 2 interactors
STRINGi3702.AT5G47520.1

Structurei

3D structure databases

ProteinModelPortaliQ9FGK5
SMRiQ9FGK5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi43 – 51Effector regionBy similarity9

Sequence similaritiesi

Belongs to the small GTPase superfamily. Rab family.Curated

Phylogenomic databases

eggNOGiKOG0087 Eukaryota
COG1100 LUCA
HOGENOMiHOG000233968
InParanoidiQ9FGK5
KOiK07904
OMAiSSGGRWC
OrthoDBiEOG09360LC1
PhylomeDBiQ9FGK5

Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR005225 Small_GTP-bd_dom
IPR001806 Small_GTPase
PfamiView protein in Pfam
PF00071 Ras, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR00231 small_GTP, 1 hit
PROSITEiView protein in PROSITE
PS51419 RAB, 1 hit

Sequencei

Sequence statusi: Complete.

Q9FGK5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAFYSEDDKS EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE
60 70 80 90 100
FQTQKMDING KEIKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRQ
110 120 130 140 150
TFHSIGRWLN ELHTHSDMNV VTILVGNKSD LKDLREVSTA EGKALAEAQG
160 170 180 190 200
LFFMETSALD SSNVAAAFET VVKEIYNILS RKVMSSQELN KQDPASLSNG
210 220
KKVVIPSDGQ GEFKKGGCCS S
Length:221
Mass (Da):24,445
Last modified:March 1, 2001 - v1
Checksum:i5E9A9DEEB530C3FC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB025628 Genomic DNA Translation: BAB09078.1
CP002688 Genomic DNA Translation: AED95528.1
BT004809 mRNA Translation: AAO44075.1
AK222160 mRNA Translation: BAD95258.1
AK227772 mRNA Translation: BAE99754.1
RefSeqiNP_199563.1, NM_124125.4
UniGeneiAt.29886
At.29887

Genome annotation databases

EnsemblPlantsiAT5G47520.1; AT5G47520.1; AT5G47520
GeneIDi834802
GrameneiAT5G47520.1; AT5G47520.1; AT5G47520
KEGGiath:AT5G47520

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB025628 Genomic DNA Translation: BAB09078.1
CP002688 Genomic DNA Translation: AED95528.1
BT004809 mRNA Translation: AAO44075.1
AK222160 mRNA Translation: BAD95258.1
AK227772 mRNA Translation: BAE99754.1
RefSeqiNP_199563.1, NM_124125.4
UniGeneiAt.29886
At.29887

3D structure databases

ProteinModelPortaliQ9FGK5
SMRiQ9FGK5
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi20050, 2 interactors
IntActiQ9FGK5, 2 interactors
STRINGi3702.AT5G47520.1

PTM databases

iPTMnetiQ9FGK5

Proteomic databases

PaxDbiQ9FGK5
PRIDEiQ9FGK5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G47520.1; AT5G47520.1; AT5G47520
GeneIDi834802
GrameneiAT5G47520.1; AT5G47520.1; AT5G47520
KEGGiath:AT5G47520

Organism-specific databases

AraportiAT5G47520
TAIRilocus:2169053 AT5G47520

Phylogenomic databases

eggNOGiKOG0087 Eukaryota
COG1100 LUCA
HOGENOMiHOG000233968
InParanoidiQ9FGK5
KOiK07904
OMAiSSGGRWC
OrthoDBiEOG09360LC1
PhylomeDBiQ9FGK5

Miscellaneous databases

PROiPR:Q9FGK5

Gene expression databases

ExpressionAtlasiQ9FGK5 baseline and differential
GenevisibleiQ9FGK5 AT

Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR005225 Small_GTP-bd_dom
IPR001806 Small_GTPase
PfamiView protein in Pfam
PF00071 Ras, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR00231 small_GTP, 1 hit
PROSITEiView protein in PROSITE
PS51419 RAB, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRAA5A_ARATH
AccessioniPrimary (citable) accession number: Q9FGK5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 3, 2011
Last sequence update: March 1, 2001
Last modified: November 7, 2018
This is version 118 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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