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UniProtKB - Q9FFN0 (GDL72_ARATH)

Entry version 96 (10 Feb 2021)
Sequence version 1 (01 Mar 2001)
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Protein

GDSL esterase/lipase At5g03810

Gene

At5g03810

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei37NucleophileBy similarity1
Active sitei328By similarity1
Active sitei331By similarity1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHydrolase
Biological processLipid degradation, Lipid metabolism

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		ARA:AT5G03810-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
GDSL esterase/lipase At5g03810 (EC:3.1.1.-)
Alternative name(s):
Extracellular lipase At5g03810
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At5g03810
ORF Names:F8F6.20, MED24.11
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

More...Araporti		AT5G03810

The Arabidopsis Information Resource

More...TAIRi		locus:2150555, AT5G03810

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Secreted

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 24Sequence analysisAdd BLAST24
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000036741225 – 353GDSL esterase/lipase At5g03810Add BLAST329

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi100N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi255N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi256N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi260N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi320N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q9FFN0

ProteomicsDB: a multi-organism proteome resource

More...ProteomicsDBi		221988

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		Q9FFN0, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		Q9FFN0, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		3702.AT5G03810.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the 'GDSL' lipolytic enzyme family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG0017, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_015101_0_1_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		Q9FFN0

Identification of Orthologs from Complete Genome Data

More...OMAi		NGFFETR

Database of Orthologous Groups

More...OrthoDBi		704138at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		Q9FFN0

Family and domain databases

Conserved Domains Database

More...CDDi		cd01837, SGNH_plant_lipase_like, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		3.40.50.1110, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR001087, GDSL
IPR008265, Lipase_GDSL_AS
IPR036514, SGNH_hydro_sf
IPR035669, SGNH_plant_lipase-like

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00657, Lipase_GDSL, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS01098, LIPASE_GDSL_SER, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q9FFN0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKMFITMSMC LSVIACFYAG VGTGETLVPA LIIMGDSVVD AGNNNHRITL 
        60         70         80         90        100
VKANFPPYGR DFVAHSATGR FSNGKLATDF TAENLGFTSY PVAYLSQEAN 
       110        120        130        140        150
ETNLLTGANF ASGASGFDDA TAIFYNAITL SQQLKNYKEY QNKVTNIVGK 
       160        170        180        190        200
ERANEIFSGA IHLLSTGSSD FLQSYYINPI LNRIFTPDQY SDHLLRSYST 
       210        220        230        240        250
FVQNLYGLGA RRIGVTTLPP LGCLPAAITL FGGVGNNMCV ERLNQDAVSF 
       260        270        280        290        300
NTKLNNTSIN LTNNLPGLKL VVFDIYNPLL NMVINPVEYG FFESRRACCG 
       310        320        330        340        350
TGTMETSFLC NALSVGTCSN ATNYVFWDGF HPSEAANRVI ANNLLVQGIP 

LIS
Length:353
Mass (Da):38,355
Last modified:March 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i0668FE27B79B265B
GO

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence CAB85501 differs from that shown. Reason: Erroneous gene model prediction.Curated

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes natural variant(s) of the protein sequence.<p><a href='/help/variant' target='_top'>More...</a></p>Natural varianti98E → D in strain: cv. Bla-10, cv. Chi-1, cv. Cvi-0, cv. Di-G, cv. Gr-3, cv. Landsberg erecta, cv. Li-3, cv. Mt-0, cv. PHW-1 and cv. Sha. 1 Publication1
Natural varianti150K → T in strain: cv. Bla-10. 1 Publication1
Natural varianti193H → R in strain: cv. Bla-10, cv. Chi-1, cv. Co-1, cv. Cvi-0, cv. Di-G, cv. Gr-3, cv. Landsberg erecta, cv. Li-3, cv. Mt-0, cv. PHW-32 and cv. Sha. 1 Publication1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AB005235 Genomic DNA Translation: BAB08607.1
AL162873 Genomic DNA Translation: CAB85501.1 Sequence problems.
CP002688 Genomic DNA Translation: AED90657.1
EU352030 Genomic DNA Translation: ABZ85648.1
EU352031 Genomic DNA Translation: ABZ85649.1
EU352032 Genomic DNA Translation: ABZ85650.1
EU352033 Genomic DNA Translation: ABZ85651.1
EU352034 Genomic DNA Translation: ABZ85652.1
EU352035 Genomic DNA Translation: ABZ85653.1
EU352036 Genomic DNA Translation: ABZ85654.1
EU352037 Genomic DNA Translation: ABZ85655.1
EU352038 Genomic DNA Translation: ABZ85656.1
EU352039 Genomic DNA Translation: ABZ85657.1
EU352040 Genomic DNA Translation: ABZ85658.1
EU352041 Genomic DNA Translation: ABZ85659.1
EU352042 Genomic DNA Translation: ABZ85660.1
EU352043 Genomic DNA Translation: ABZ85661.1

Protein sequence database of the Protein Information Resource

More...PIRi		T48408

NCBI Reference Sequences

More...RefSeqi		NP_196001.2, NM_120462.2

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		AT5G03810.1; AT5G03810.1; AT5G03810

Database of genes from NCBI RefSeq genomes

More...GeneIDi		831715

Gramene; a comparative resource for plants

More...Gramenei		AT5G03810.1; AT5G03810.1; AT5G03810

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ath:AT5G03810

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB005235 Genomic DNA Translation: BAB08607.1
AL162873 Genomic DNA Translation: CAB85501.1 Sequence problems.
CP002688 Genomic DNA Translation: AED90657.1
EU352030 Genomic DNA Translation: ABZ85648.1
EU352031 Genomic DNA Translation: ABZ85649.1
EU352032 Genomic DNA Translation: ABZ85650.1
EU352033 Genomic DNA Translation: ABZ85651.1
EU352034 Genomic DNA Translation: ABZ85652.1
EU352035 Genomic DNA Translation: ABZ85653.1
EU352036 Genomic DNA Translation: ABZ85654.1
EU352037 Genomic DNA Translation: ABZ85655.1
EU352038 Genomic DNA Translation: ABZ85656.1
EU352039 Genomic DNA Translation: ABZ85657.1
EU352040 Genomic DNA Translation: ABZ85658.1
EU352041 Genomic DNA Translation: ABZ85659.1
EU352042 Genomic DNA Translation: ABZ85660.1
EU352043 Genomic DNA Translation: ABZ85661.1
PIRiT48408
RefSeqiNP_196001.2, NM_120462.2

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi3702.AT5G03810.1

Proteomic databases

PaxDbiQ9FFN0
ProteomicsDBi221988

Genome annotation databases

EnsemblPlantsiAT5G03810.1; AT5G03810.1; AT5G03810
GeneIDi831715
GrameneiAT5G03810.1; AT5G03810.1; AT5G03810
KEGGiath:AT5G03810

Organism-specific databases

AraportiAT5G03810
TAIRilocus:2150555, AT5G03810

Phylogenomic databases

eggNOGiKOG0017, Eukaryota
HOGENOMiCLU_015101_0_1_1
InParanoidiQ9FFN0
OMAiNGFFETR
OrthoDBi704138at2759
PhylomeDBiQ9FFN0

Enzyme and pathway databases

BioCyciARA:AT5G03810-MONOMER

Miscellaneous databases

Protein Ontology

More...PROi		PR:Q9FFN0

Gene expression databases

ExpressionAtlasiQ9FFN0, baseline and differential
GenevisibleiQ9FFN0, AT

Family and domain databases

CDDicd01837, SGNH_plant_lipase_like, 1 hit
Gene3Di3.40.50.1110, 1 hit
InterProiView protein in InterPro
IPR001087, GDSL
IPR008265, Lipase_GDSL_AS
IPR036514, SGNH_hydro_sf
IPR035669, SGNH_plant_lipase-like
PfamiView protein in Pfam
PF00657, Lipase_GDSL, 1 hit
PROSITEiView protein in PROSITE
PS01098, LIPASE_GDSL_SER, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiGDL72_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9FFN0
Secondary accession number(s): B0ZCL3
, B0ZCL4, B0ZCL9, B0ZCM0, B0ZCM2, Q9LZC6
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 24, 2009
Last sequence update: March 1, 2001
Last modified: February 10, 2021
This is version 96 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
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