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Entry version 47 (22 Apr 2020)
Sequence version 1 (01 Mar 2001)
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Protein

Trans-splicing factor Raa3, chloroplastic

Gene

RAA3

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Required for trans-splicing of exons 1 and 2 of the chloroplast encoded psaA mRNA (a group II intron). May be required for stability of the chloroplast RNA-protein complex in which it is found.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processmRNA processing, mRNA splicing

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Trans-splicing factor Raa3, chloroplastic
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RAA3
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3055 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeChlorophytacore chlorophytesChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a transit peptide.<p><a href='/help/transit' target='_top'>More...</a></p>Transit peptidei1 – 40ChloroplastSequence analysisAdd BLAST40
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000002219741 – 1783Trans-splicing factor Raa3, chloroplasticAdd BLAST1743

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Part of a 1700 kDa complex that includes the precursor RNA to exon 1 and the tscA RNA.

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3055.EDP03491

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1713 – 1772RAPPROSITE-ProRule annotationAdd BLAST60

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi112 – 311Ala-richAdd BLAST200
Compositional biasi343 – 436Ser-richAdd BLAST94
Compositional biasi478 – 1078Ala-richAdd BLAST601
Compositional biasi771 – 778Poly-Ala8
Compositional biasi920 – 926Poly-Pro7
Compositional biasi927 – 932Poly-Ala6
Compositional biasi1047 – 1055Poly-Gly9
Compositional biasi1310 – 1415Ala-richAdd BLAST106
Compositional biasi1318 – 1325Poly-Ala8
Compositional biasi1405 – 1415Poly-AlaAdd BLAST11
Compositional biasi1416 – 1430Gln-richAdd BLAST15
Compositional biasi1496 – 1506Arg-richAdd BLAST11
Compositional biasi1669 – 1675Poly-Pro7

<p>This subsection of the 'Family and domains' section provides general information on the biological role of a domain. The term 'domain' is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

The N-terminal 453 amino acids are dispensable, while the C-terminal 630 amino acids are required for function.

Keywords - Domaini

Transit peptide

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR013584, RAP

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51286, RAP, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q9FEC4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKADLATAKG SSPAFSAPRT YRARLLSRCL NKCFNTVLVS GGAAESRFRG
60 70 80 90 100
GATVGKAGAH DARGVGDLVD FLQQEATPYE VNVPPYLILP PLKSNEATTH
110 120 130 140 150
RRAGDSGGQG PAAAGGRGQA RHGRRQAAAS AATTVSAAPQ TGATKPAATA
160 170 180 190 200
KTTPQRPRGS DADAGSRAQS QYGFGDPPGG GALKGAVDAA SDAAPDVAAA
210 220 230 240 250
SPAPAGISDQ LSTPACPPER EPQAGKPRAS GRAPAAPGVG PQDVGGGSGA
260 270 280 290 300
CAPAPDESHM GLTHRDQGHD ERISQTAGEA WKAGAVAAPP AAPTPSPPGL
310 320 330 340 350
AAAPTRLASS ALGTHSSDGD MRRAVPGRDT PSLSAVAGPV TLSGSSSSSS
360 370 380 390 400
GRNSSSNSNT STSSTSNGVT ITSNVGVNGA SPQERLMAAR RAVVTMQWNT
410 420 430 440 450
HLGRRGRSFA PLPTGGMSIA TSAASSSTSS ASSSSSMNDG SNAKKTSDAA
460 470 480 490 500
VSLPVGQQPA AEQPHVPTAP GGPSQTGASA VAAQAPSSAM PTAAMAATMG
510 520 530 540 550
SATIGSAATL PTAAVVSSAA AEGTQPSGLL LAGGRPALLG RTIQGRIARL
560 570 580 590 600
QAAREALRAA RHARVGAAMQ PPPVQARPVQ GQSGQVPQVG QGPVQSQPGR
610 620 630 640 650
RQEPAASATK LHVADGLPAR PVQPAVSATD LQTDTATAAS APFPVSDASL
660 670 680 690 700
GSTEPLAASA PTTSLASASG PAIGTSSSNA HSSAAASEAA AGTVRAPTDT
710 720 730 740 750
AAPAASPAAT APALASTPFA TPAAAPLPEP PEVVAARDLL GRLSRYQPAG
760 770 780 790 800
RDDGPAVLAP HARYSPAAYQ AAAAAAAAQP QLLLAPLSLP QLAAVVAGYA
810 820 830 840 850
AAGHRHEPLL EALAGVALAK AGGAGGIGGG AAGAVPRGQA ASELKRSRLT
860 870 880 890 900
FRAACVFLTA LARLGYRGGA VTRLAAALAV WLARQLNTGA VTPRAKWKGT
910 920 930 940 950
WLAAALWAYA TLEQLPAAAP TPPPPPASAA AASTAPRAAE SRPAAAPAPA
960 970 980 990 1000
EATATRTPLL TAPQLAPQRA SASPDLELAR GGVLLFTEAA EAVRVAPGWL
1010 1020 1030 1040 1050
HLMDGREALW SLWAFRKAAA AYGRGEGTAS GAVYVAAAGG YAMLQSGGAG
1060 1070 1080 1090 1100
GGGMGQAGGA GRGGAGAGAA ALPLVVAAPR YEANPLVELK LADRATSLFP
1110 1120 1130 1140 1150
QLDPGQLAEA HVLLLECGLA EDELPQALTA LRRCVIARAD SIRPQPLAVM
1160 1170 1180 1190 1200
VATLAVMQVR DVVWLSALAM ACRNKMINMS PDQIVAVLHA FGSVLRFHHL
1210 1220 1230 1240 1250
LLFHAAAVVC SCPGMWRLGG MGAGEVLRLV GAFAATRHYE GRLLRAAAER
1260 1270 1280 1290 1300
MLQLGSTGST AGQRAGLLQS LCSLHYRHNG LLRIVVADTF GLADLSPGSA
1310 1320 1330 1340 1350
GQPRNMGSSA KLAGAGTAAA AGAAAPGLPP SLLVAVAEAC GQLQHRPPGL
1360 1370 1380 1390 1400
LQALHASRAA VWPRVGLAQR ATLCWALLVL TGGLPAQYLP ADRPRDAKRH
1410 1420 1430 1440 1450
VRQSAAAAAA AAAAAQDQRQ EQHQQHQQEQ LLAKALVEYL QALGAGVQRW
1460 1470 1480 1490 1500
PPPAPSSYHL QLLVACTVLA SCTPPPAPAH MQQQPQSSGT GCQKSRRRRM
1510 1520 1530 1540 1550
RYRRSRGAVL QQQLKEELDK LPASAMQRAL EVQRRARSAA LGGWAHEVAS
1560 1570 1580 1590 1600
VVREVLQEAS VDARADSEGR QPLPPHWLGQ PPATLLSAAV STGVEVCDGA
1610 1620 1630 1640 1650
MLVDVAVELE VEAGLPRPQV KGRGRGRRTA ARATTDVQGA EQAVVTEEAA
1660 1670 1680 1690 1700
YEHSHPLRQR LQLALDLCPL PPPPPRTAAP VLSAAYAPGA GGAGTSATAE
1710 1720 1730 1740 1750
VTANRTTGAP RSLAVGAAAG GAVIRNSRWL LSGAGALRRR LLTHAGWLVV
1760 1770 1780
PVRERQWKDL RSAEQQRRVV REWLKAVLLH AQQ
Length:1,783
Mass (Da):180,401
Last modified:March 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i40F6206BA6EBDCDB
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF310675 Genomic DNA Translation: AAG40000.1
AF310674 mRNA Translation: AAG39999.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF310675 Genomic DNA Translation: AAG40000.1
AF310674 mRNA Translation: AAG39999.1

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi3055.EDP03491

Family and domain databases

InterProiView protein in InterPro
IPR013584, RAP
PROSITEiView protein in PROSITE
PS51286, RAP, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRAA3_CHLRE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9FEC4
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 10, 2002
Last sequence update: March 1, 2001
Last modified: April 22, 2020
This is version 47 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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