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Entry version 116 (22 Apr 2020)
Sequence version 1 (01 Mar 2001)
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Protein

60S ribosomal protein L21-2

Gene

RPL21E

more
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
60S ribosomal protein L21-2
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RPL21E
Ordered Locus Names:At1g57660
ORF Names:T8L23.13
AND
Name:RPL21F
Ordered Locus Names:At1g57860
ORF Names:F12K22.19
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

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Araporti
AT1G57660
AT1G57860

The Arabidopsis Information Resource

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TAIRi
locus:2009410 AT1G57860
locus:2206480 AT1G57660

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002405881 – 16460S ribosomal protein L21-2Add BLAST164

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9FDZ9

PRoteomics IDEntifications database

More...
PRIDEi
Q9FDZ9

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9FDZ9 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9FDZ9 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

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BioGridi
27367, 3 interactors

Protein interaction database and analysis system

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IntActi
Q9FDZ9, 1 interactor

STRING: functional protein association networks

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STRINGi
3702.AT1G57860.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1732 Eukaryota
COG2139 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_103610_0_1_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9FDZ9

KEGG Orthology (KO)

More...
KOi
K02889

Identification of Orthologs from Complete Genome Data

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OMAi
SMKNNTP

Database of Orthologous Groups

More...
OrthoDBi
1455026at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9FDZ9

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.30.30.70, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR036948 Ribosomal_L21_sf
IPR001147 Ribosomal_L21e
IPR018259 Ribosomal_L21e_CS
IPR008991 Translation_prot_SH3-like_sf

The PANTHER Classification System

More...
PANTHERi
PTHR20981 PTHR20981, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01157 Ribosomal_L21e, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50104 SSF50104, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS01171 RIBOSOMAL_L21E, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9FDZ9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPAGHGVRAR TRDLFARPFR KKGYIPLSTY LRTFKVGDYV DVKVNGAIHK
60 70 80 90 100
GMPHKFYHGR TGRIWNVTKR AVGVEVNKQI GNRIIRKRIH VRVEHVQQSR
110 120 130 140 150
CAEEFKLRKK QNDVLKADAK ARGETISTKR QPKGPKPGFM VEGMTLETVT
160
PIPYDVVNDL KGGY
Length:164
Mass (Da):18,709
Last modified:March 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD8212A08409BD26E
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC079733 Genomic DNA Translation: AAG50742.1
AC079732 Genomic DNA Translation: AAG29235.1
CP002684 Genomic DNA Translation: AEE33449.1
CP002684 Genomic DNA Translation: AEE33474.1
AY050840 mRNA Translation: AAK92775.1
AY091167 mRNA Translation: AAM14106.1
BT004794 mRNA Translation: AAO44060.1
AY086851 mRNA Translation: AAM63899.1
F20014 mRNA Translation: CAA23380.1

Protein sequence database of the Protein Information Resource

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PIRi
H96610

NCBI Reference Sequences

More...
RefSeqi
NP_564724.1, NM_104563.4
NP_564726.1, NM_104579.4

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G57660.1; AT1G57660.1; AT1G57660
AT1G57860.1; AT1G57860.1; AT1G57860

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
842142
842161

Gramene; a comparative resource for plants

More...
Gramenei
AT1G57660.1; AT1G57660.1; AT1G57660
AT1G57860.1; AT1G57860.1; AT1G57860

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G57660
ath:AT1G57860

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC079733 Genomic DNA Translation: AAG50742.1
AC079732 Genomic DNA Translation: AAG29235.1
CP002684 Genomic DNA Translation: AEE33449.1
CP002684 Genomic DNA Translation: AEE33474.1
AY050840 mRNA Translation: AAK92775.1
AY091167 mRNA Translation: AAM14106.1
BT004794 mRNA Translation: AAO44060.1
AY086851 mRNA Translation: AAM63899.1
F20014 mRNA Translation: CAA23380.1
PIRiH96610
RefSeqiNP_564724.1, NM_104563.4
NP_564726.1, NM_104579.4

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

BioGridi27367, 3 interactors
IntActiQ9FDZ9, 1 interactor
STRINGi3702.AT1G57860.1

Proteomic databases

PaxDbiQ9FDZ9
PRIDEiQ9FDZ9

Genome annotation databases

EnsemblPlantsiAT1G57660.1; AT1G57660.1; AT1G57660
AT1G57860.1; AT1G57860.1; AT1G57860
GeneIDi842142
842161
GrameneiAT1G57660.1; AT1G57660.1; AT1G57660
AT1G57860.1; AT1G57860.1; AT1G57860
KEGGiath:AT1G57660
ath:AT1G57860

Organism-specific databases

AraportiAT1G57660
AT1G57860
TAIRilocus:2009410 AT1G57860
locus:2206480 AT1G57660

Phylogenomic databases

eggNOGiKOG1732 Eukaryota
COG2139 LUCA
HOGENOMiCLU_103610_0_1_1
InParanoidiQ9FDZ9
KOiK02889
OMAiSMKNNTP
OrthoDBi1455026at2759
PhylomeDBiQ9FDZ9

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9FDZ9

Gene expression databases

ExpressionAtlasiQ9FDZ9 baseline and differential
GenevisibleiQ9FDZ9 AT

Family and domain databases

Gene3Di2.30.30.70, 1 hit
InterProiView protein in InterPro
IPR036948 Ribosomal_L21_sf
IPR001147 Ribosomal_L21e
IPR018259 Ribosomal_L21e_CS
IPR008991 Translation_prot_SH3-like_sf
PANTHERiPTHR20981 PTHR20981, 1 hit
PfamiView protein in Pfam
PF01157 Ribosomal_L21e, 1 hit
SUPFAMiSSF50104 SSF50104, 1 hit
PROSITEiView protein in PROSITE
PS01171 RIBOSOMAL_L21E, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRL212_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9FDZ9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: March 1, 2001
Last modified: April 22, 2020
This is version 116 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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