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Entry version 97 (11 Dec 2019)
Sequence version 2 (01 Mar 2004)
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Protein
Submitted name:

Cellulosomal scaffoldin

Gene

scaA

Organism
Pseudobacteroides cellulosolvens
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

Protein family/group databases

Carbohydrate-Active enZymes

More...
CAZyi
CBM3 Carbohydrate-Binding Module Family 3

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Cellulosomal scaffoldinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:scaAImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPseudobacteroides cellulosolvensImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri35825 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesHungateiclostridiaceaePseudobacteroides

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 27Sequence analysisAdd BLAST27
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500432544628 – 2319Sequence analysisAdd BLAST2292

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9FDJ9

Database of comparative protein structure models

More...
ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

More...
PDBe-KBi
Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...
EvolutionaryTracei
Q9FDJ9

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini961 – 1116CBM3InterPro annotationAdd BLAST156
Domaini2245 – 2316DockerinInterPro annotationAdd BLAST72

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni191 – 222DisorderedSequence analysisAdd BLAST32
Regioni931 – 956DisorderedSequence analysisAdd BLAST26
Regioni1113 – 1150DisorderedSequence analysisAdd BLAST38
Regioni2045 – 2069DisorderedSequence analysisAdd BLAST25

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi196 – 213PolarSequence analysisAdd BLAST18
Compositional biasi1123 – 1150PolarSequence analysisAdd BLAST28

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.1330.10, 1 hit
2.60.40.710, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008965 CBM2/CBM3_carb-bd_dom_sf
IPR001956 CBM3
IPR036966 CBM3_sf
IPR002102 Cohesin_dom
IPR002105 Dockerin_1_rpt
IPR016134 Dockerin_dom
IPR036439 Dockerin_dom_sf
IPR001434 DUF11
IPR018247 EF_Hand_1_Ca_BS

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00942 CBM_3, 1 hit
PF00963 Cohesin, 11 hits
PF00404 Dockerin_1, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01067 CBM_3, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF49384 SSF49384, 12 hits
SSF63446 SSF63446, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR01451 B_ant_repeat, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51172 CBM3, 1 hit
PS51766 DOCKERIN, 1 hit
PS00018 EF_HAND_1, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9FDJ9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRTKRLLAVL LTTLLLLGSV FTNVSLAAAA LSISVTLDKT TASVGDIITA
60 70 80 90 100
TISANGIQNF AGYQANVKYD PAVLQPVYSA TEPYDGSSVP EYGTLLQKRY
110 120 130 140 150
SPTDMGANDL ANGSLTFGRT YMNLSGYMNP GSSESTGTLA IIKFKVLKKA
160 170 180 190 200
STQIKLQNAA SLTNAVDGTM VFDWTGAQLS NYSVERAPVL NDDGTKPSVA
210 220 230 240 250
PTTAPTTVKP TAGPTSPVRP IDSGVTVEVD KTDAKVGDII TATINVKNIN
260 270 280 290 300
GFAGYQANLK YNPAVLQPVY EDGTAYDNAS APEYGKLLQK RYSPTDMASN
310 320 330 340 350
DITKGTLTFG RTYMNLDSYK NSGAAEKEGS IAVIRFKVLK VEATTITLQN
360 370 380 390 400
AASLTNAVDG TMLFDWTGAQ LAGYRVQQAP SINGVVVTTT PLPTVSTVPS
410 420 430 440 450
TTPLTGSGVE ATVDKTTASV GDIITYTISV KDIAGFAGYQ ANVKYDPSVL
460 470 480 490 500
KPVYEDGTEY DNAAVPDYGK LLQKRYSPTD MASNDLSKGT LTFGRTYMNL
510 520 530 540 550
DSYKASGSAE TSGSIAVIRF KVLKNTATTI KLQNAASLTN AVDGTMLFDW
560 570 580 590 600
SGAQLAGYKV AQAPSINGVV VETPVPTVSL PPSQTIGSGV TATVDKTTAS
610 620 630 640 650
VGDIITYTIN VKDVAGFAGY QANVKYDPSV LQPVYDDRSA YDSAAVPEYG
660 670 680 690 700
TLLQKRYSPT DMASNDLSKG TLTFGRTYMN LDSYKASGSA ETTGSIAVIR
710 720 730 740 750
FKVLKNTATT IKLQNAASLT NAVDGTMLFD WSGAQLAGYK VAQAPSINGV
760 770 780 790 800
VVETPVPTVS VPPSQIPGSG VVATVDKTTA SVGDIITYTI NVKDVAGFAG
810 820 830 840 850
YQANVKYDPA VLQPVYDDGT AYDSAAVPEY GTLLQKRYSP TDMASNDLSK
860 870 880 890 900
GTLTFGRTYM ALDSYKASGS AETTGSIAVI RFKVLRSTAT AILLQNAASL
910 920 930 940 950
TNAVDGTMLF DWTGAQLKGY KVAQASSING TVTPTKPGNT PTITKPATPT
960 970 980 990 1000
KPANTPTPVQ VNSDLKLLFS NNGAAASSNQ ICMNMKLQNT GSSTYDLSKI
1010 1020 1030 1040 1050
TIRYFYTSDD DKALTYYSDY VSIGSASATF NNLSPVHAKA NKYIEIKLAS
1060 1070 1080 1090 1100
GTLGAAGAQW PSQSEVTIQG RVAKADWTNV DQSNDYSYPG SMSQFGENKL
1110 1120 1130 1140 1150
VAVYYNGALV YGTPPPTGPE NTPTDRPTST PTKPKNTPTP TKNTSTPIDG
1160 1170 1180 1190 1200
TVELSLDKTT AGVGDIITAT LKINKIPGFA GYQANIKYDP AALTPVYSDG
1210 1220 1230 1240 1250
TAYDDAAVPE YGDLLQKRYS PTDMAANDVA KGTLTFGRTY MALDSYKASG
1260 1270 1280 1290 1300
SAETTGSIAV IRFKVLKSTG STSIKLENAA SLTNAVDGTM LFDWTGAQLG
1310 1320 1330 1340 1350
GYTVKQASTI KLGSGVTKGE VFVTLDKSTA AAGDIVTATI NVKEFDVISG
1360 1370 1380 1390 1400
YQANIKYDPS ALQPVYSDGT AYDSSSVPES GDLLQKRYSP TDMASNDLTK
1410 1420 1430 1440 1450
GTLTFGRTYM NLASYKTAGV KENTGSIAKI SFKVLKSGPV SILLADSPSL
1460 1470 1480 1490 1500
TNAITGTMMF DWDGVQLDNY KVTQAGGSTT SPTPTQGITK GEVFVTLDKT
1510 1520 1530 1540 1550
KAAVGDIITA TINVKDFDSV AGYQASVKYD PAVLQPVYSD GTAYDNSSVP
1560 1570 1580 1590 1600
EYGKLLQKRY SPTDMGANDT ANGILTFGRT YMNLSGYKAS GVAEKEGSIA
1610 1620 1630 1640 1650
VISFKVLKAT ETKVLLKNVP SLTSPVDGTM VFDWDGVQLA DYKVTQAPAV
1660 1670 1680 1690 1700
NAPVVVTPTP TTVSATPTTA TATPTPTKVN TKGEVFVTLD KTTAAVGDII
1710 1720 1730 1740 1750
TATINVKDFD SVAGYQANIK FDPAVLKPVY SDGTAYDNSS VPEYGKLLQK
1760 1770 1780 1790 1800
RYSPTDMGAN NLENGILTFG RTYMNMAGYK ASGVAEKEGS IAVISFKVLK
1810 1820 1830 1840 1850
ATETKIELKN VPSLTSPVDG TMVFDWDGVQ LANYKVTQAP VVNGPVVVTP
1860 1870 1880 1890 1900
TPTTVSATPT TATATPTPTK VNTKGEVFVT LDKTTAAVGD IITATINVKD
1910 1920 1930 1940 1950
FDSVAGYQAN IKFDPAVLKP VYSDGTAYDN SSVPEYGKLL QKRYSPTDMG
1960 1970 1980 1990 2000
ANNLENGILT FGRTYMNMAG YKASGVAEKE GSIAVISFKV LKATETKIEL
2010 2020 2030 2040 2050
TNVPSLTNPV DGTMVFDWDG TQLANYKVTQ APAVNAPVVV TPTPTTATAT
2060 2070 2080 2090 2100
PTTATATPTT ATATPTPTTP VDGSVLTAID NDKVAVGDKV TLTINVDKIT
2110 2120 2130 2140 2150
NFSGYQFNIK YNTTYLQPWD TIADEAYTDS TMPDYGTLLQ GRFNATDMSK
2160 2170 2180 2190 2200
HNLSQGVLNF GRLYMNLSAY RASGKPESTG AVAKVTFKVI KEIPAEGIKL
2210 2220 2230 2240 2250
ATFENGSSMN NAVDGTMLFD WDGNMYSSSA YKVVQPGLIY PKGTATVLYG
2260 2270 2280 2290 2300
DVDNDGNVDS DDYAYMRQWL IGMIADFPGG DIGLANADVD GDGNVDSDDY
2310
AYMRQWLIGM ISEFPAEQK
Length:2,319
Mass (Da):245,334
Last modified:March 1, 2004 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i1BFD22BBCB8D9254
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF224509 Genomic DNA Translation: AAG01230.2

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF224509 Genomic DNA Translation: AAG01230.2

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1TYJX-ray1.60A2073-2242[»]
2XBTX-ray1.83A958-1115[»]
2Y3NX-ray1.90A/C2073-2242[»]
SMRiQ9FDJ9
ModBaseiSearch...
PDBe-KBiSearch...

Protein family/group databases

CAZyiCBM3 Carbohydrate-Binding Module Family 3

Miscellaneous databases

EvolutionaryTraceiQ9FDJ9

Family and domain databases

Gene3Di1.10.1330.10, 1 hit
2.60.40.710, 1 hit
InterProiView protein in InterPro
IPR008965 CBM2/CBM3_carb-bd_dom_sf
IPR001956 CBM3
IPR036966 CBM3_sf
IPR002102 Cohesin_dom
IPR002105 Dockerin_1_rpt
IPR016134 Dockerin_dom
IPR036439 Dockerin_dom_sf
IPR001434 DUF11
IPR018247 EF_Hand_1_Ca_BS
PfamiView protein in Pfam
PF00942 CBM_3, 1 hit
PF00963 Cohesin, 11 hits
PF00404 Dockerin_1, 1 hit
SMARTiView protein in SMART
SM01067 CBM_3, 1 hit
SUPFAMiSSF49384 SSF49384, 12 hits
SSF63446 SSF63446, 1 hit
TIGRFAMsiTIGR01451 B_ant_repeat, 1 hit
PROSITEiView protein in PROSITE
PS51172 CBM3, 1 hit
PS51766 DOCKERIN, 1 hit
PS00018 EF_HAND_1, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9FDJ9_9FIRM
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9FDJ9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2004
Last modified: December 11, 2019
This is version 97 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources
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