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Protein

Capsid protein

Gene

ORF1

Organism
Torque teno tamarin virus (isolate So-TTV2)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Self-assembles to form an icosahedral capsid with a T=1 symmetry, about 30 nm in diameter, and consisting of 60 capsid proteins. The capsid encapsulates the genomic DNA. Capsid protein is involved in attachment and entry into the host cell (By similarity).By similarity

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Gene namesi
ORF Names:ORF1
OrganismiTorque teno tamarin virus (isolate So-TTV2)
Taxonomic identifieri766186 [NCBI]
Taxonomic lineageiVirusesssDNA virusesAnelloviridaeEpsilontorquevirus
Virus hostiSaguinus imperator (Emperor tamarin) [TaxID: 9491]
Proteomesi
  • UP000008780 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, T=1 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004042731 – 712Capsid proteinAdd BLAST712

Proteomic databases

PRIDEiQ9DUC1

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili670 – 706Sequence analysisAdd BLAST37

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi5 – 81Arg-richAdd BLAST77

Sequence similaritiesi

Keywords - Domaini

Coiled coil

Phylogenomic databases

OrthoDBiVOG0900003O

Family and domain databases

InterProiView protein in InterPro
IPR004219 TTvirus_Unk
PfamiView protein in Pfam
PF02956 TT_ORF1, 1 hit

Sequencei

Sequence statusi: Complete.

Q9DUC1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAYGRRYWRR RRWRRRGGRW WRRRRPWKTR WRRRRRRWRR RRYGRRARRF
60 70 80 90 100
RRRHRVGRWR KLFRRVKSRV VRQWDPNVTR RCMINGYDHA LFWGQQAQHR
110 120 130 140 150
ILYDNLPWPI KKEGTQEGGS MNMMQLTLQF LYKDNLAGRN RWTRSNWDMD
160 170 180 190 200
LAKYHETTLL FPRHRNYSYV VFITRGPNDI LDEHTYPGLH PEKMLGRRKK
210 220 230 240 250
IVVWSKDLRP HGKNYIRVRV PPPQVFKNQW YFQRDICQMP ILTLGFAAFD
260 270 280 290 300
PVNVTLAGNM ANSSIILWGI PYWSRPMPYN TWYDYWTKCA GPQNIPWSDR
310 320 330 340 350
QTNIAAGITQ KSAQTCLKLK NKHFGLTNTA IVSDYDKDNI DKNTKQIKTI
360 370 380 390 400
VMSLNRWYPK WPMKWKDAGD INTQTPFPYR YSWREDQGWG NKVRLWTREC
410 420 430 440 450
RTDIPEETLG IENMPLYVLM NGYIDYVTNH STHSPLNWVV SVFCPYTDPP
460 470 480 490 500
MTNVIPVGKD WFIQNVEPGE NKYPSDNADN TFAPGEKTKI KNYDSSKDEF
510 520 530 540 550
TGNVIRAPDV YDSLPAQQAL YIASPFSLKW AQTTGSIVFF YQSKWTWGGD
560 570 580 590 600
FPRQRPIIDP CNRPKWGGLP VTGYDETGLL LQNPEKAEAR ARGHLGDLRR
610 620 630 640 650
GDLTKTALKR LMELTSTEEG SPQKKKRRDK EVRTTADLLR PEDVYCWMSP
660 670 680 690 700
TPETPPKAGK TPESSFAETY DNHTKLAKRV KKEIHNQNRR HRLLLAHLRR
710
ERDRLLGHHL LR
Length:712
Mass (Da):84,927
Last modified:March 1, 2001 - v1
Checksum:i0E0324B6121CD66A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB041960 Genomic DNA Translation: BAB19316.1
RefSeqiYP_003587880.1, NC_014085.1

Genome annotation databases

GeneIDi9086643
KEGGivg:9086643

Entry informationi

Entry nameiCAPSD_TTVE1
AccessioniPrimary (citable) accession number: Q9DUC1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 8, 2011
Last sequence update: March 1, 2001
Last modified: March 15, 2017
This is version 36 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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