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UniProtKB - Q9DBT3 (CCD97_MOUSE)

Entry version 126 (25 May 2022)
Sequence version 1 (01 Jun 2001)
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Protein

Coiled-coil domain-containing protein 97

Gene

Ccdc97

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Coiled-coil domain-containing protein 97
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Ccdc97
Synonyms:D7Ertd462e
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Mus › Mus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 7

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...MGIi		MGI:1196455, Ccdc97

Eukaryotic Pathogen, Vector and Host Database Resources

More...VEuPathDBi		HostDB:ENSMUSG00000002608

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002860971 – 340Coiled-coil domain-containing protein 97Add BLAST340

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei1N-acetylmethionineBy similarity1
Modified residuei47PhosphothreonineBy similarity1
Modified residuei215PhosphothreonineCombined sources1
Modified residuei272PhosphoserineBy similarity1
Modified residuei334PhosphoserineBy similarity1

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

Encyclopedia of Proteome Dynamics

More...EPDi		Q9DBT3

jPOST - Japan Proteome Standard Repository/Database

More...jPOSTi		Q9DBT3

MaxQB - The MaxQuant DataBase

More...MaxQBi		Q9DBT3

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q9DBT3

PeptideAtlas

More...PeptideAtlasi		Q9DBT3

PRoteomics IDEntifications database

More...PRIDEi		Q9DBT3

ProteomicsDB: a multi-organism proteome resource

More...ProteomicsDBi		265366

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		Q9DBT3

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...PhosphoSitePlusi		Q9DBT3

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSMUSG00000002608, Expressed in retinal neural layer and 291 other tissues

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		Q9DBT3, MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		10090.ENSMUSP00000002683

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

More...RNActi		Q9DBT3, protein

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

AlphaFold Protein Structure Database

More...AlphaFoldDBi		Q9DBT3

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 62DisorderedSequence analysisAdd BLAST62
Regioni200 – 220DisorderedSequence analysisAdd BLAST21
Regioni239 – 272DisorderedSequence analysisAdd BLAST34
Regioni289 – 310DisorderedSequence analysisAdd BLAST22
Regioni321 – 340DisorderedSequence analysisAdd BLAST20

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili229 – 258Sequence analysisAdd BLAST30

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1 – 22Basic and acidic residuesSequence analysisAdd BLAST22
Compositional biasi48 – 62Polar residuesSequence analysisAdd BLAST15
Compositional biasi244 – 260Acidic residuesSequence analysisAdd BLAST17

Keywords - Domaini

Coiled coil

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG3044, Eukaryota

Ensembl GeneTree

More...GeneTreei		ENSGT00390000015495

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_058245_1_1_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		Q9DBT3

Identification of Orthologs from Complete Genome Data

More...OMAi		DSYDVRN

Database of Orthologous Groups

More...OrthoDBi		1227195at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		Q9DBT3

TreeFam database of animal gene trees

More...TreeFami		TF316152

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR040233, CCD97-like_C
IPR018613, Ccdc97-like

The PANTHER Classification System

More...PANTHERi		PTHR31840, PTHR31840, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF09747, DUF2052, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q9DBT3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEAVAAAEVT ERKPDNDGVE PRVVHWGELS QTPIPSGPQE KETAERTPDI 
        60         70         80         90        100
PNSGSSQAES PAVSAMLHAI AASHLPVCSQ QQGEPDLTEP EKVAILGQLY 
       110        120        130        140        150
HKKPLVFLER FRTGLREEHL ACFGHLRGDH RADFYCAEVA RQGTARPRTL 
       160        170        180        190        200
RTRLRNRRYA ALRELIQGGE YFSDEQMRFR APLLYEQYIG QYLTQEELNA 
       210        220        230        240        250
RTAAPQAPRS GSPGTPAYPL SDLLFQSYQE RELQQKLLQQ QEEEEACFEE 
       260        270        280        290        300
EEDSDEEDQR SDKDSEAWVP DSEERLILRE EFTSRMHQRF LDGKDGGFDY 
       310        320        330        340
STVDDNPDFD NLDIVARDEE DRYFDEEEPE DVSSAELGGD
Length:340
Mass (Da):38,724
Last modified:June 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iDEFA1F2C03205BB2
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0U1RP69A0A0U1RP69_MOUSE
Coiled-coil domain-containing prote...
Ccdc97
168Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AK004762 mRNA Translation: BAB23543.1
AK045509 mRNA Translation: BAC32401.1
AK088221 mRNA Translation: BAC40219.1
AK155466 mRNA Translation: BAE33278.1
BC006752 mRNA Translation: AAH06752.1
BC078634 mRNA Translation: AAH78634.1

The Consensus CDS (CCDS) project

More...CCDSi		CCDS20994.1

NCBI Reference Sequences

More...RefSeqi		NP_083047.1, NM_028771.2

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENSMUST00000002683; ENSMUSP00000002683; ENSMUSG00000002608

Database of genes from NCBI RefSeq genomes

More...GeneIDi		52132

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		mmu:52132

UCSC genome browser

More...UCSCi		uc009ftr.1, mouse

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK004762 mRNA Translation: BAB23543.1
AK045509 mRNA Translation: BAC32401.1
AK088221 mRNA Translation: BAC40219.1
AK155466 mRNA Translation: BAE33278.1
BC006752 mRNA Translation: AAH06752.1
BC078634 mRNA Translation: AAH78634.1
CCDSiCCDS20994.1
RefSeqiNP_083047.1, NM_028771.2

3D structure databases

AlphaFoldDBiQ9DBT3
ModBaseiSearch...
SWISS-MODEL-WorkspaceiSubmit a new modelling project...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000002683

PTM databases

iPTMnetiQ9DBT3
PhosphoSitePlusiQ9DBT3

Proteomic databases

EPDiQ9DBT3
jPOSTiQ9DBT3
MaxQBiQ9DBT3
PaxDbiQ9DBT3
PeptideAtlasiQ9DBT3
PRIDEiQ9DBT3
ProteomicsDBi265366

Protocols and materials databases

Antibodypedia a portal for validated antibodies

More...Antibodypediai		48733, 130 antibodies from 20 providers

Genome annotation databases

EnsembliENSMUST00000002683; ENSMUSP00000002683; ENSMUSG00000002608
GeneIDi52132
KEGGimmu:52132
UCSCiuc009ftr.1, mouse

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		90324
MGIiMGI:1196455, Ccdc97
VEuPathDBiHostDB:ENSMUSG00000002608

Phylogenomic databases

eggNOGiKOG3044, Eukaryota
GeneTreeiENSGT00390000015495
HOGENOMiCLU_058245_1_1_1
InParanoidiQ9DBT3
OMAiDSYDVRN
OrthoDBi1227195at2759
PhylomeDBiQ9DBT3
TreeFamiTF316152

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...BioGRID-ORCSi		52132, 3 hits in 73 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...ChiTaRSi		Ccdc97, mouse

Protein Ontology

More...PROi		PR:Q9DBT3
RNActiQ9DBT3, protein

The Stanford Online Universal Resource for Clones and ESTs

More...SOURCEi		Search...

Gene expression databases

BgeeiENSMUSG00000002608, Expressed in retinal neural layer and 291 other tissues
GenevisibleiQ9DBT3, MM

Family and domain databases

InterProiView protein in InterPro
IPR040233, CCD97-like_C
IPR018613, Ccdc97-like
PANTHERiPTHR31840, PTHR31840, 1 hit
PfamiView protein in Pfam
PF09747, DUF2052, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCCD97_MOUSE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9DBT3
Secondary accession number(s): Q922V3
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 1, 2007
Last sequence update: June 1, 2001
Last modified: May 25, 2022
This is version 126 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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