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Protein

Testis-specific gene 13 protein

Gene

Tsga13

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Testis-specific gene 13 protein
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Tsga13
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 6

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

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MGIi
MGI:1891413 Tsga13

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002863461 – 273Testis-specific gene 13 proteinAdd BLAST273

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
Q9DA17

PaxDb, a database of protein abundance averages across all three domains of life

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PaxDbi
Q9DA17

PRoteomics IDEntifications database

More...
PRIDEi
Q9DA17

PTM databases

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

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PhosphoSitePlusi
Q9DA17

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

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Bgeei
ENSMUSG00000039032 Expressed in 36 organ(s), highest expression level in testis

CleanEx database of gene expression profiles

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CleanExi
MM_TSGA13

Genevisible search portal to normalized and curated expression data from Genevestigator

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Genevisiblei
Q9DA17 MM

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

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ProteinModelPortali
Q9DA17

Database of comparative protein structure models

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ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
ENOG410IJ2B Eukaryota
ENOG410Y2MS LUCA

Ensembl GeneTree

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GeneTreei
ENSGT00390000009822

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
HOG000065720

The HOVERGEN Database of Homologous Vertebrate Genes

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HOVERGENi
HBG108604

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
Q9DA17

Identification of Orthologs from Complete Genome Data

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OMAi
WEPLTLS

Database of Orthologous Groups

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OrthoDBi
EOG091G0KQ1

Database for complete collections of gene phylogenies

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PhylomeDBi
Q9DA17

TreeFam database of animal gene trees

More...
TreeFami
TF328772

Family and domain databases

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR029241 TSGA13

The PANTHER Classification System

More...
PANTHERi
PTHR37352 PTHR37352, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF14994 TSGA13, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9DA17-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGPKKNSKFQ EVSGSKPVGN VSIRFEKQLG QDDEEMYDTT AQSKFVLKNL
60 70 80 90 100
RHYTVHPNMA KYYEPLKPTK LQRFLTQKKK MNSFMLKVTE YDQDMTLLLM
110 120 130 140 150
TNNPPPCSIS QEKDGAPIYF PPEFQLKETL HRCKPNKNDF FPTMSQKKKL
160 170 180 190 200
KPELKPVFPM KRLDDPTFKG QQWFRFSTDN DFNIEGKYSE IYALRKQKKM
210 220 230 240 250
YPNLIFAPAS QRETKKHVSM KSESETPTSQ VFWEPLTFSK LLEEKPTRSV
260 270
PGESFFRHGR AQQWIVKDAA VIW
Length:273
Mass (Da):32,067
Last modified:June 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iB8E74498C76AFBF2
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AF294348 mRNA Translation: AAK97090.1
AK006265 mRNA Translation: BAB24491.1
BC125597 mRNA Translation: AAI25598.1
BC125599 mRNA Translation: AAI25600.1

The Consensus CDS (CCDS) project

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CCDSi
CCDS19980.1

NCBI Reference Sequences

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RefSeqi
NP_473414.1, NM_054073.2

UniGene gene-oriented nucleotide sequence clusters

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UniGenei
Mm.207048

Genome annotation databases

Ensembl eukaryotic genome annotation project

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Ensembli
ENSMUST00000048580; ENSMUSP00000040894; ENSMUSG00000039032

Database of genes from NCBI RefSeq genomes

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GeneIDi
116732

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
mmu:116732

UCSC genome browser

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UCSCi
uc009bfx.1 mouse

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF294348 mRNA Translation: AAK97090.1
AK006265 mRNA Translation: BAB24491.1
BC125597 mRNA Translation: AAI25598.1
BC125599 mRNA Translation: AAI25600.1
CCDSiCCDS19980.1
RefSeqiNP_473414.1, NM_054073.2
UniGeneiMm.207048

3D structure databases

ProteinModelPortaliQ9DA17
ModBaseiSearch...
MobiDBiSearch...

PTM databases

PhosphoSitePlusiQ9DA17

Proteomic databases

EPDiQ9DA17
PaxDbiQ9DA17
PRIDEiQ9DA17

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000048580; ENSMUSP00000040894; ENSMUSG00000039032
GeneIDi116732
KEGGimmu:116732
UCSCiuc009bfx.1 mouse

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
114960
MGIiMGI:1891413 Tsga13

Phylogenomic databases

eggNOGiENOG410IJ2B Eukaryota
ENOG410Y2MS LUCA
GeneTreeiENSGT00390000009822
HOGENOMiHOG000065720
HOVERGENiHBG108604
InParanoidiQ9DA17
OMAiWEPLTLS
OrthoDBiEOG091G0KQ1
PhylomeDBiQ9DA17
TreeFamiTF328772

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

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ChiTaRSi
Tsga13 mouse

Protein Ontology

More...
PROi
PR:Q9DA17

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSMUSG00000039032 Expressed in 36 organ(s), highest expression level in testis
CleanExiMM_TSGA13
GenevisibleiQ9DA17 MM

Family and domain databases

InterProiView protein in InterPro
IPR029241 TSGA13
PANTHERiPTHR37352 PTHR37352, 1 hit
PfamiView protein in Pfam
PF14994 TSGA13, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiTSG13_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9DA17
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 1, 2007
Last sequence update: June 1, 2001
Last modified: November 7, 2018
This is version 86 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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