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Entry version 142 (17 Jun 2020)
Sequence version 1 (01 Jun 2001)
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Protein
Submitted name:

Predicted gene, 20806

Gene

Gm20806

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Predicted gene, 20806Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Gm20806Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome Y

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:5434162 Gm20806

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000094739 Expressed in testis and 2 other tissues

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

Ensembl GeneTree

More...
GeneTreei
ENSGT00950000182925

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_068595_0_0_1

Identification of Orthologs from Complete Genome Data

More...
OMAi
YVQFTRS

TreeFam database of animal gene trees

More...
TreeFami
TF332665

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.80.10.70, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR003671 SPIN/Ssty
IPR042567 SPIN/Ssty_sf

The PANTHER Classification System

More...
PANTHERi
PTHR10405 PTHR10405, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02513 Spin-Ssty, 3 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9D9T3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTSLKKKSRR KPSSQALGNI VGCRISHGWK EGNEPVTHWK AIILGQLPTN
60 70 80 90 100
PSLYLVKYDG IDSVYGQELH SDERILNLKV LPHKVVFPQV RDVHLAGALV
110 120 130 140 150
GREVQHKFEG KDGSEDNWSG MVLAQVPFLQ DYFYISYKKD PVLYVYQLLD
160 170 180 190 200
DYKEGNLHII PETPLAEARS GDDNDFLIGS WVQYTRDDGS KKFGKVVYKV
210 220
LANPTVYFIK FLGDLHIYVY TLVSNIT
Length:227
Mass (Da):25,832
Last modified:June 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iFCE497B73EE3214C
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC177800 Genomic DNA No translation available.
AK006494 mRNA Translation: BAB24619.1

NCBI Reference Sequences

More...
RefSeqi
NP_001153607.2, NM_001160135.2
XP_011249374.1, XM_011251072.1
XP_011249384.1, XM_011251082.1
XP_011249386.1, XM_011251084.1
XP_011249395.1, XM_011251093.1
XP_011249640.1, XM_011251338.1
XP_011249818.1, XM_011251516.1
XP_017174213.1, XM_017318724.1
XP_017174214.1, XM_017318725.1
XP_017174215.1, XM_017318726.1
XP_017174216.1, XM_017318727.1
XP_017174217.1, XM_017318728.1
XP_017174218.1, XM_017318729.1
XP_017174221.1, XM_017318732.1
XP_017174222.1, XM_017318733.1
XP_017174225.1, XM_017318736.1
XP_017174230.1, XM_017318741.1
XP_017174231.1, XM_017318742.1
XP_017174243.1, XM_017318754.1
XP_017174252.1, XM_017318763.1
XP_017174253.1, XM_017318764.1
XP_017174254.1, XM_017318765.1
XP_017174317.1, XM_017318828.1
XP_017174365.1, XM_017318876.1

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000180324; ENSMUSP00000136000; ENSMUSG00000094739
ENSMUST00000190349; ENSMUSP00000141047; ENSMUSG00000094739

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
100039574
100040429
100042268
100042475
100861821
101056308
108168537
108168538
108168539
108168540
108168541
108168542
108168543
108168549
108168550
108168556
108168561
108168562
108168563
108168665
70009

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:100039574
mmu:100040429
mmu:100042268
mmu:100042475
mmu:100861821
mmu:101056308
mmu:108168537
mmu:108168538
mmu:108168539
mmu:108168540
mmu:108168541
mmu:108168542
mmu:108168543
mmu:108168549
mmu:108168550
mmu:108168556
mmu:108168561
mmu:108168562
mmu:108168563
mmu:108168665

UCSC genome browser

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UCSCi
uc012hsv.1 mouse

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC177800 Genomic DNA No translation available.
AK006494 mRNA Translation: BAB24619.1
RefSeqiNP_001153607.2, NM_001160135.2
XP_011249374.1, XM_011251072.1
XP_011249384.1, XM_011251082.1
XP_011249386.1, XM_011251084.1
XP_011249395.1, XM_011251093.1
XP_011249640.1, XM_011251338.1
XP_011249818.1, XM_011251516.1
XP_017174213.1, XM_017318724.1
XP_017174214.1, XM_017318725.1
XP_017174215.1, XM_017318726.1
XP_017174216.1, XM_017318727.1
XP_017174217.1, XM_017318728.1
XP_017174218.1, XM_017318729.1
XP_017174221.1, XM_017318732.1
XP_017174222.1, XM_017318733.1
XP_017174225.1, XM_017318736.1
XP_017174230.1, XM_017318741.1
XP_017174231.1, XM_017318742.1
XP_017174243.1, XM_017318754.1
XP_017174252.1, XM_017318763.1
XP_017174253.1, XM_017318764.1
XP_017174254.1, XM_017318765.1
XP_017174317.1, XM_017318828.1
XP_017174365.1, XM_017318876.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsembliENSMUST00000180324; ENSMUSP00000136000; ENSMUSG00000094739
ENSMUST00000190349; ENSMUSP00000141047; ENSMUSG00000094739
GeneIDi100039574
100040429
100042268
100042475
100861821
101056308
108168537
108168538
108168539
108168540
108168541
108168542
108168543
108168549
108168550
108168556
108168561
108168562
108168563
108168665
70009
KEGGimmu:100039574
mmu:100040429
mmu:100042268
mmu:100042475
mmu:100861821
mmu:101056308
mmu:108168537
mmu:108168538
mmu:108168539
mmu:108168540
mmu:108168541
mmu:108168542
mmu:108168543
mmu:108168549
mmu:108168550
mmu:108168556
mmu:108168561
mmu:108168562
mmu:108168563
mmu:108168665
UCSCiuc012hsv.1 mouse

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
70009
MGIiMGI:5434162 Gm20806

Phylogenomic databases

GeneTreeiENSGT00950000182925
HOGENOMiCLU_068595_0_0_1
OMAiYVQFTRS
TreeFamiTF332665

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...
BioGRID-ORCSi
100039574 2 hits in 4 CRISPR screens
100040429 0 hits in 2 CRISPR screens
100042268 0 hits in 2 CRISPR screens
100042475 0 hits in 2 CRISPR screens
100861821 0 hits in 2 CRISPR screens
70009 1 hit in 7 CRISPR screens

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSMUSG00000094739 Expressed in testis and 2 other tissues

Family and domain databases

Gene3Di2.80.10.70, 1 hit
InterProiView protein in InterPro
IPR003671 SPIN/Ssty
IPR042567 SPIN/Ssty_sf
PANTHERiPTHR10405 PTHR10405, 1 hit
PfamiView protein in Pfam
PF02513 Spin-Ssty, 3 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9D9T3_MOUSE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9D9T3
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: June 17, 2020
This is version 142 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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