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Protein

Solute carrier family 52, riboflavin transporter, member 3

Gene

Slc52a3

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Transporter for riboflavin, which must be obtained as a nutrient via intestinal absorption. Riboflavin transport is Na+-independent at low pH but significantly reduced by Na+ depletion under neutral pH conditions.By similarity

<p>This subsection of the ‘Function’ section describes regulatory mechanisms for enzymes, transporters or microbial transcription factors, and reports the components which regulate (by activation or inhibition) the reaction.<p><a href='/help/activity_regulation' target='_top'>More...</a></p>Activity regulationi

Activity is strongly inhibited by riboflavin analogs, such as lumiflavin, flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD), and to a lesser extent by amiloride.By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

  • cellular response to heat Source: MGI
  • riboflavin transport Source: UniProtKB
  • sensory perception of sound Source: UniProtKB

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processTransport

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-MMU-196843 Vitamin B2 (riboflavin) metabolism

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Solute carrier family 52, riboflavin transporter, member 3
Alternative name(s):
Riboflavin transporter 2
Short name:
RFT2
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Slc52a3
Synonyms:Rft2, RFVT3
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:1916948 Slc52a3

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini1 – 6CytoplasmicSequence analysis6
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei7 – 27HelicalSequence analysisAdd BLAST21
Topological domaini28 – 37ExtracellularSequence analysis10
Transmembranei38 – 58HelicalSequence analysisAdd BLAST21
Topological domaini59 – 71CytoplasmicSequence analysisAdd BLAST13
Transmembranei72 – 92HelicalSequence analysisAdd BLAST21
Topological domaini93 – 105ExtracellularSequence analysisAdd BLAST13
Transmembranei106 – 126HelicalSequence analysisAdd BLAST21
Topological domaini127 – 137CytoplasmicSequence analysisAdd BLAST11
Transmembranei138 – 158HelicalSequence analysisAdd BLAST21
Topological domaini159 – 211ExtracellularSequence analysisAdd BLAST53
Transmembranei212 – 232HelicalSequence analysisAdd BLAST21
Topological domaini233 – 291CytoplasmicSequence analysisAdd BLAST59
Transmembranei292 – 312HelicalSequence analysisAdd BLAST21
Topological domaini313 – 326ExtracellularSequence analysisAdd BLAST14
Transmembranei327 – 347HelicalSequence analysisAdd BLAST21
Topological domaini348 – 350CytoplasmicSequence analysis3
Transmembranei351 – 371HelicalSequence analysisAdd BLAST21
Topological domaini372 – 387ExtracellularSequence analysisAdd BLAST16
Transmembranei388 – 408HelicalSequence analysisAdd BLAST21
Topological domaini409 – 418CytoplasmicSequence analysis10
Transmembranei419 – 439HelicalSequence analysisAdd BLAST21
Topological domaini440 – 460ExtracellularSequence analysisAdd BLAST21

Keywords - Cellular componenti

Cell membrane, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000426371 – 460Solute carrier family 52, riboflavin transporter, member 3Add BLAST460

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi94N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi168N-linked (GlcNAc...) asparagineSequence analysis1
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei242PhosphoserineBy similarity1
Modified residuei266PhosphoserineCombined sources1
<p>This subsection of the PTM / Processing":/help/ptm_processing_section section describes the positions of cysteine residues participating in disulfide bonds.<p><a href='/help/disulfid' target='_top'>More...</a></p>Disulfide bondi377 ↔ 454By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein, Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9D6X5

PeptideAtlas

More...
PeptideAtlasi
Q9D6X5

PRoteomics IDEntifications database

More...
PRIDEi
Q9D6X5

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q9D6X5

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q9D6X5

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Within the small intestine, it is particulary expressed in the jujenum and the ileum. Almost negligible expression in the stomach, duodenum, and large intestine.1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000027463 Expressed in 161 organ(s), highest expression level in intestinal villus

CleanEx database of gene expression profiles

More...
CleanExi
MM_2310046K01RIK

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9D6X5 MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

Protein interaction database and analysis system

More...
IntActi
Q9D6X5, 1 interactor

Molecular INTeraction database

More...
MINTi
Q9D6X5

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000072961

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
Q9D6X5

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the riboflavin transporter family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG4255 Eukaryota
ENOG410YE1U LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00390000003774

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000247012

The HOVERGEN Database of Homologous Vertebrate Genes

More...
HOVERGENi
HBG051170

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9D6X5

KEGG Orthology (KO)

More...
KOi
K14620

Identification of Orthologs from Complete Genome Data

More...
OMAi
AMFLHFT

Database of Orthologous Groups

More...
OrthoDBi
EOG091G0BZA

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9D6X5

TreeFam database of animal gene trees

More...
TreeFami
TF314820

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR009357 Riboflavin_transptr

The PANTHER Classification System

More...
PANTHERi
PTHR12929 PTHR12929, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF06237 DUF1011, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: Q9D6X5-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MAFLTHLLVC VFGMGSWVAI NGLWVELPLL VTELPEAWYL PSYLTVVIQL
60 70 80 90 100
ANIGPLLVTL MHRFRPGCLS EVPVIFLILC VGTAACILLA FLWNVTSWIQ
110 120 130 140 150
GGQHSVAFIV LTFFLALVDC TSSVTFLPFM SQLPTYYLTT FFIGEGLSGL
160 170 180 190 200
LPALVALVQG SGITTCVNVT ETPGTTLNTM ETPITQGNLS PSLPSPSWHQ
210 220 230 240 250
ESRYLAPRFS PLLFFLLLSF LTGCCLVAFF LLQRQPWGRQ GSIEDLLHSQ
260 270 280 290 300
VTLHSIRPRD TEDTSSLGAP VSSPGKGSVE ASVASLRPAQ LAFIYSVVAF
310 320 330 340 350
VNALTNGVLP SVQTYSCLPY GPVAYHLSAT LSSVASPLAC FLPIFLPNRS
360 370 380 390 400
LLFLGVLTVL GTGFGAYNMA MAAMSPCPVL QGHWGGEVLI VLSWVLFAAC
410 420 430 440 450
LSYVKVMLGV ILRDRSRSAL LWCGAAVQLG SLIGALLMFP LVNVLKLFSS
460
ADYCSLDCSV
Length:460
Mass (Da):49,559
Last modified:October 5, 2010 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7F299163AD3C884E
GO
Isoform 2 (identifier: Q9D6X5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     187-250: GNLSPSLPSP...GSIEDLLHSQ → VAVIPGGAHS...CQGDAGCDLA
     251-460: Missing.

Note: No experimental confirmation available.
Show »
Length:250
Mass (Da):26,770
Checksum:iA10C6C43BBEF31C4
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti81V → L in BAE41605 (PubMed:16141072).Curated1
Sequence conflicti182T → N in BAB26542 (PubMed:16141072).Curated1
Sequence conflicti195S → P in BAE41605 (PubMed:16141072).Curated1
Sequence conflicti223G → C in BAB26542 (PubMed:16141072).Curated1
Sequence conflicti286L → I in BAE41605 (PubMed:16141072).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting. The information stored in this subsection is used to automatically construct alternative protein sequence(s) for display.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_003816187 – 250GNLSP…LLHSQ → VAVIPGGAHSVGDRLWGLQY GHGCYEPLPCPAGSLGWRSP YRALLGAVCSLSQLCQGDAG CDLA in isoform 2. 1 PublicationAdd BLAST64
Alternative sequenceiVSP_003817251 – 460Missing in isoform 2. 1 PublicationAdd BLAST210

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AK009850 mRNA Translation: BAB26542.1
AK029091 mRNA Translation: BAC26290.1
AK154970 mRNA Translation: BAE32962.1
AK170158 mRNA Translation: BAE41605.1
AL845161 Genomic DNA Translation: CAM17705.1
AL845161 Genomic DNA Translation: CAM17704.1
CH466551 Genomic DNA Translation: EDL05945.1
BC016127 mRNA Translation: AAH16127.1

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS16876.1 [Q9D6X5-1]
CCDS50749.1 [Q9D6X5-2]

NCBI Reference Sequences

More...
RefSeqi
NP_001158291.1, NM_001164819.1 [Q9D6X5-1]
NP_001158292.1, NM_001164820.1 [Q9D6X5-2]
NP_081448.2, NM_027172.3 [Q9D6X5-1]

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
Mm.258262

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000073228; ENSMUSP00000072961; ENSMUSG00000027463 [Q9D6X5-1]
ENSMUST00000109858; ENSMUSP00000105484; ENSMUSG00000027463 [Q9D6X5-2]
ENSMUST00000109859; ENSMUSP00000105485; ENSMUSG00000027463 [Q9D6X5-2]
ENSMUST00000109861; ENSMUSP00000105487; ENSMUSG00000027463 [Q9D6X5-1]

Database of genes from NCBI RefSeq genomes

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GeneIDi
69698

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:69698

UCSC genome browser

More...
UCSCi
uc008neu.2 mouse [Q9D6X5-1]
uc012cga.1 mouse [Q9D6X5-2]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK009850 mRNA Translation: BAB26542.1
AK029091 mRNA Translation: BAC26290.1
AK154970 mRNA Translation: BAE32962.1
AK170158 mRNA Translation: BAE41605.1
AL845161 Genomic DNA Translation: CAM17705.1
AL845161 Genomic DNA Translation: CAM17704.1
CH466551 Genomic DNA Translation: EDL05945.1
BC016127 mRNA Translation: AAH16127.1
CCDSiCCDS16876.1 [Q9D6X5-1]
CCDS50749.1 [Q9D6X5-2]
RefSeqiNP_001158291.1, NM_001164819.1 [Q9D6X5-1]
NP_001158292.1, NM_001164820.1 [Q9D6X5-2]
NP_081448.2, NM_027172.3 [Q9D6X5-1]
UniGeneiMm.258262

3D structure databases

ProteinModelPortaliQ9D6X5
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ9D6X5, 1 interactor
MINTiQ9D6X5
STRINGi10090.ENSMUSP00000072961

PTM databases

iPTMnetiQ9D6X5
PhosphoSitePlusiQ9D6X5

Proteomic databases

PaxDbiQ9D6X5
PeptideAtlasiQ9D6X5
PRIDEiQ9D6X5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000073228; ENSMUSP00000072961; ENSMUSG00000027463 [Q9D6X5-1]
ENSMUST00000109858; ENSMUSP00000105484; ENSMUSG00000027463 [Q9D6X5-2]
ENSMUST00000109859; ENSMUSP00000105485; ENSMUSG00000027463 [Q9D6X5-2]
ENSMUST00000109861; ENSMUSP00000105487; ENSMUSG00000027463 [Q9D6X5-1]
GeneIDi69698
KEGGimmu:69698
UCSCiuc008neu.2 mouse [Q9D6X5-1]
uc012cga.1 mouse [Q9D6X5-2]

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
113278
MGIiMGI:1916948 Slc52a3

Phylogenomic databases

eggNOGiKOG4255 Eukaryota
ENOG410YE1U LUCA
GeneTreeiENSGT00390000003774
HOGENOMiHOG000247012
HOVERGENiHBG051170
InParanoidiQ9D6X5
KOiK14620
OMAiAMFLHFT
OrthoDBiEOG091G0BZA
PhylomeDBiQ9D6X5
TreeFamiTF314820

Enzyme and pathway databases

ReactomeiR-MMU-196843 Vitamin B2 (riboflavin) metabolism

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9D6X5

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSMUSG00000027463 Expressed in 161 organ(s), highest expression level in intestinal villus
CleanExiMM_2310046K01RIK
GenevisibleiQ9D6X5 MM

Family and domain databases

InterProiView protein in InterPro
IPR009357 Riboflavin_transptr
PANTHERiPTHR12929 PTHR12929, 1 hit
PfamiView protein in Pfam
PF06237 DUF1011, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiS52A3_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9D6X5
Secondary accession number(s): A2AQU3
, Q3TDJ6, Q3U328, Q8CE36, Q91WB9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 10, 2003
Last sequence update: October 5, 2010
Last modified: December 5, 2018
This is version 120 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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