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Entry version 139 (11 Dec 2019)
Sequence version 1 (01 Jun 2001)
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Protein

Synaptojanin-2-binding protein

Gene

Synj2bp

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Isoform 1 regulates endocytosis of activin type 2 receptor kinases through the Ral/RALBP1-dependent pathway and may be involved in suppression of activin-induced signal transduction. Isoform 2 and isoform 3 show a stimulatory affect on activin-induced signal transduction and enhance activin type 2 expression at the cell surface.2 Publications

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processEndocytosis

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-MMU-438066 Unblocking of NMDA receptors, glutamate binding and activation
R-MMU-5673001 RAF/MAP kinase cascade
R-MMU-6794361 Neurexins and neuroligins

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Synaptojanin-2-binding proteinBy similarity
Alternative name(s):
Activin receptor-interacting protein 21 Publication
Activin receptor-interacting protein 4Imported
Mitochondrial outer membrane protein 25By similarity
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Synj2bpImported
Synonyms:Arip21 Publication, Omp25By similarity
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 12

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:1344347 Synj2bp

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini1 – 117CytoplasmicSequence analysisAdd BLAST117
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei118 – 138Helical; Anchor for type IV membrane proteinSequence analysisAdd BLAST21
Topological domaini139 – 145Mitochondrial intermembraneSequence analysis7

Keywords - Cellular componenti

Cytoplasm, Membrane, Mitochondrion, Mitochondrion outer membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003759821 – 145Synaptojanin-2-binding proteinAdd BLAST145

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
Q9D6K5

jPOST - Japan Proteome Standard Repository/Database

More...
jPOSTi
Q9D6K5

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9D6K5

PeptideAtlas

More...
PeptideAtlasi
Q9D6K5

PRoteomics IDEntifications database

More...
PRIDEi
Q9D6K5

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q9D6K5

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q9D6K5

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Isoform 1 and isoform 2 are widely expressed, notably in brain, heart, lung, liver, kidney, skeletal muscle, ovary and testis. Isoform 3 is detected only in heart, spleen and testis.2 Publications

<p>This subsection of the ‘Expression’ section reports the experimentally proven effects of inducers and repressors (usually chemical compounds or environmental factors) on the level of protein (or mRNA) expression (up-regulation, down-regulation, constitutive expression).<p><a href='/help/induction' target='_top'>More...</a></p>Inductioni

Up-regulated between 12 and 24 hours after treatment with activin A and lipopolysaccharide (LPS). Down-regulated by calcium ionophore A23187.1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000021139 Expressed in 19 organ(s), highest expression level in testis

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9D6K5 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9D6K5 MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Binds (via the PDZ domain) to isoform 2A of SYNJ2 (via the unique motif in the C-terminus) (By similarity).

Interacts (via C-terminus) with RALBP1.

Interacts (via PDZ domain) with ACVR2A (via C-terminus) and ACVR2B (via C-terminus).

Forms a ternary complex with ACVR2A and RALBP1 (PubMed:11882656, PubMed:16648306).

Interacts with MAPK12 (By similarity).

Interacts with DLL1; enhances DLL1 protein stability, and promotes notch signaling in endothelial cells (By similarity).

By similarity2 Publications

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

WithEntry#Exp.IntActNotes
A2ARV42EBI-300910,EBI-300875

GO - Molecular functioni

Protein-protein interaction databases

Protein interaction database and analysis system

More...
IntActi
Q9D6K5, 4 interactors

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000129224

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

More...
RNActi
Q9D6K5 protein

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9D6K5

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini13 – 100PDZPROSITE-ProRule annotationAdd BLAST88

Keywords - Domaini

Signal-anchor, Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410KDNK Eukaryota
ENOG4111VAQ LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00830000128402

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000146436

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9D6K5

KEGG Orthology (KO)

More...
KOi
K20057

Identification of Orthologs from Complete Genome Data

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OMAi
MMDPELE

Database of Orthologous Groups

More...
OrthoDBi
1333715at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9D6K5

TreeFam database of animal gene trees

More...
TreeFami
TF318964

Family and domain databases

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR001478 PDZ
IPR036034 PDZ_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00595 PDZ, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00228 PDZ, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50156 SSF50156, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50106 PDZ, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (4+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 4 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 4 described isoforms and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 12 Publications (identifier: Q9D6K5-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MNGRVDYLVT EEEINLTRGP SGLGFNIVGG TDQQYVSNDS GIYVSRIKED
60 70 80 90 100
GAAAQDGRLQ EGDKILSVNG QDLKNLLHQD AVDLFRNAGC AVSLRVQHRL
110 120 130 140
PVQNGPIVHR GEGEPSGVPV AMVLLPVFAL TMVAVWAFVR YRKQL
Length:145
Mass (Da):15,815
Last modified:June 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iBB40BB0114084F67
GO
Isoform 22 Publications (identifier: Q9D6K5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     100-118: LPVQNGPIVHRGEGEPSGV → VGITCTWIWDSRLLHCSCE
     119-145: Missing.

Show »
Length:118
Mass (Da):12,994
Checksum:i5450D7582F5A297C
GO
Isoform 31 Publication (identifier: Q9D6K5-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-20: MNGRVDYLVTEEEINLTRGP → MIF
     100-118: LPVQNGPIVHRGEGEPSGV → VGITCTWIWDSRLLHCSCE
     119-145: Missing.

Show »
Length:101
Mass (Da):11,096
Checksum:i58A5064CBC35EC0E
GO
Isoform 41 Publication (identifier: Q9D6K5-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     101-145: PVQNGPIVHR...WAFVRYRKQL → LVVGGSFGLR...ERLLCLLCRQ

Show »
Length:153
Mass (Da):17,040
Checksum:i86BFE35BEEAF0D9A
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
E9PVN6E9PVN6_MOUSE
Predicted gene 20498
Gm20498
182Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
E9PVQ9E9PVQ9_MOUSE
Predicted gene 20498
Synj2bp Gm20498
40Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAH27433 differs from that shown. Reason: Erroneous initiation.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti34Q → E in BAB25432 (PubMed:16141072).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0531011 – 20MNGRV…LTRGP → MIF in isoform 3. 1 PublicationAdd BLAST20
Alternative sequenceiVSP_053102100 – 118LPVQN…EPSGV → VGITCTWIWDSRLLHCSCE in isoform 2 and isoform 3. 2 PublicationsAdd BLAST19
Alternative sequenceiVSP_053103101 – 145PVQNG…YRKQL → LVVGGSFGLREFSQIRYDAV TIKIDPELEKKLKVNKITLE SEYERLLCLLCRQ in isoform 4. 2 PublicationsAdd BLAST45
Alternative sequenceiVSP_053104119 – 145Missing in isoform 2 and isoform 3. 2 PublicationsAdd BLAST27

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF414433 mRNA Translation: AAM43958.1
AY071903 mRNA Translation: AAL60065.1
AY157057 mRNA Translation: AAO12271.1
AY138960 mRNA Translation: AAN17786.1
AY566156 mRNA Translation: AAT70239.1
AK008054 mRNA Translation: BAB25432.1
AK013474 mRNA Translation: BAB28873.1
AK033514 mRNA Translation: BAC28333.1
AK163362 mRNA Translation: BAE37317.1
BC027433 mRNA Translation: AAH27433.2 Different initiation.

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS26021.1 [Q9D6K5-1]
CCDS83979.1 [Q9D6K5-2]

NCBI Reference Sequences

More...
RefSeqi
NP_001296743.1, NM_001309814.1 [Q9D6K5-2]
NP_001296777.1, NM_001309848.1 [Q9D6K5-4]
NP_079568.1, NM_025292.7 [Q9D6K5-1]

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000114201; ENSMUSP00000109839; ENSMUSG00000090935 [Q9D6K5-3]
ENSMUST00000163402; ENSMUSP00000129224; ENSMUSG00000090935 [Q9D6K5-1]
ENSMUST00000164386; ENSMUSP00000132941; ENSMUSG00000021139 [Q9D6K5-4]
ENSMUST00000169158; ENSMUSP00000130691; ENSMUSG00000090935 [Q9D6K5-2]

Database of genes from NCBI RefSeq genomes

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GeneIDi
105940408
24071

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:105940408
mmu:24071

UCSC genome browser

More...
UCSCi
uc007oca.1 mouse [Q9D6K5-4]
uc007och.2 mouse [Q9D6K5-1]
uc007ocj.2 mouse [Q9D6K5-2]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF414433 mRNA Translation: AAM43958.1
AY071903 mRNA Translation: AAL60065.1
AY157057 mRNA Translation: AAO12271.1
AY138960 mRNA Translation: AAN17786.1
AY566156 mRNA Translation: AAT70239.1
AK008054 mRNA Translation: BAB25432.1
AK013474 mRNA Translation: BAB28873.1
AK033514 mRNA Translation: BAC28333.1
AK163362 mRNA Translation: BAE37317.1
BC027433 mRNA Translation: AAH27433.2 Different initiation.
CCDSiCCDS26021.1 [Q9D6K5-1]
CCDS83979.1 [Q9D6K5-2]
RefSeqiNP_001296743.1, NM_001309814.1 [Q9D6K5-2]
NP_001296777.1, NM_001309848.1 [Q9D6K5-4]
NP_079568.1, NM_025292.7 [Q9D6K5-1]

3D structure databases

SMRiQ9D6K5
ModBaseiSearch...

Protein-protein interaction databases

IntActiQ9D6K5, 4 interactors
STRINGi10090.ENSMUSP00000129224

PTM databases

iPTMnetiQ9D6K5
PhosphoSitePlusiQ9D6K5

Proteomic databases

EPDiQ9D6K5
jPOSTiQ9D6K5
PaxDbiQ9D6K5
PeptideAtlasiQ9D6K5
PRIDEiQ9D6K5

Protocols and materials databases

The DNASU plasmid repository

More...
DNASUi
24071

Genome annotation databases

EnsembliENSMUST00000114201; ENSMUSP00000109839; ENSMUSG00000090935 [Q9D6K5-3]
ENSMUST00000163402; ENSMUSP00000129224; ENSMUSG00000090935 [Q9D6K5-1]
ENSMUST00000164386; ENSMUSP00000132941; ENSMUSG00000021139 [Q9D6K5-4]
ENSMUST00000169158; ENSMUSP00000130691; ENSMUSG00000090935 [Q9D6K5-2]
GeneIDi105940408
24071
KEGGimmu:105940408
mmu:24071
UCSCiuc007oca.1 mouse [Q9D6K5-4]
uc007och.2 mouse [Q9D6K5-1]
uc007ocj.2 mouse [Q9D6K5-2]

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
55333
MGIiMGI:1344347 Synj2bp

Phylogenomic databases

eggNOGiENOG410KDNK Eukaryota
ENOG4111VAQ LUCA
GeneTreeiENSGT00830000128402
HOGENOMiHOG000146436
InParanoidiQ9D6K5
KOiK20057
OMAiMMDPELE
OrthoDBi1333715at2759
PhylomeDBiQ9D6K5
TreeFamiTF318964

Enzyme and pathway databases

ReactomeiR-MMU-438066 Unblocking of NMDA receptors, glutamate binding and activation
R-MMU-5673001 RAF/MAP kinase cascade
R-MMU-6794361 Neurexins and neuroligins

Miscellaneous databases

Protein Ontology

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PROi
PR:Q9D6K5
RNActiQ9D6K5 protein

The Stanford Online Universal Resource for Clones and ESTs

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SOURCEi
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Gene expression databases

BgeeiENSMUSG00000021139 Expressed in 19 organ(s), highest expression level in testis
ExpressionAtlasiQ9D6K5 baseline and differential
GenevisibleiQ9D6K5 MM

Family and domain databases

InterProiView protein in InterPro
IPR001478 PDZ
IPR036034 PDZ_sf
PfamiView protein in Pfam
PF00595 PDZ, 1 hit
SMARTiView protein in SMART
SM00228 PDZ, 1 hit
SUPFAMiSSF50156 SSF50156, 1 hit
PROSITEiView protein in PROSITE
PS50106 PDZ, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiSYJ2B_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9D6K5
Secondary accession number(s): Q2TTN6
, Q6YNE6, Q78HT9, Q8K4F3, Q9D8G4
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 26, 2009
Last sequence update: June 1, 2001
Last modified: December 11, 2019
This is version 139 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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