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UniProtKB - Q9D2I5 (ARMC9_MOUSE)

Entry version 122 (08 May 2019)
Sequence version 1 (01 Jun 2001)
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Protein

LisH domain-containing protein ARMC9

Gene

Armc9

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Required for ciliogenesis.By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

View the complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processCilium biogenesis/degradation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
LisH domain-containing protein ARMC9
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Armc9Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Mus › Mus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...MGIi		MGI:1926045 Armc9

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Cell projection, Cytoplasm, Cytoskeleton

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002805961 – 817LisH domain-containing protein ARMC9Add BLAST817

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei583PhosphoserineBy similarity1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q9D2I5

PRoteomics IDEntifications database

More...PRIDEi		Q9D2I5

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		Q9D2I5

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...PhosphoSitePlusi		Q9D2I5

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSMUSG00000062590 Expressed in 187 organ(s), highest expression level in testis

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		Q9D2I5 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		Q9D2I5 MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...BioGridi		219638, 1 interactor

STRING: functional protein association networks

More...STRINGi		10090.ENSMUSP00000108934

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini7 – 39LisHPROSITE-ProRule annotationAdd BLAST33

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili204 – 230Sequence analysisAdd BLAST27

Keywords - Domaini

Coiled coil

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG410IGND Eukaryota
ENOG410YSH6 LUCA

Ensembl GeneTree

More...GeneTreei		ENSGT00390000018026

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		Q9D2I5

KEGG Orthology (KO)

More...KOi		K22864

Identification of Orthologs from Complete Genome Data

More...OMAi		DSGDQKV

Database of Orthologous Groups

More...OrthoDBi		1327587at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		Q9D2I5

TreeFam database of animal gene trees

More...TreeFami		TF317676

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.25.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR040369 ARMC9
IPR006594 LisH

The PANTHER Classification System

More...PANTHERi		PTHR14881 PTHR14881, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00667 LisH, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF48371 SSF48371, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50896 LISH, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (9+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 9 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 9 described isoforms and 4 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q9D2I5-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MGDILAHESE LLGLVKEYLD FAEFEDTLKT FSKECKVKGK PLCKNVGGPL 
        60         70         80         90        100
KKDSKSLVIQ RDLVAAFDSG DQKAFFDLWE GHIPSSVRDT DSLAQKLEFY 
       110        120        130        140        150
LHIHFAIYLL KYCRGRPDKQ ELDKRISYFK TYLETKGAAL SQTTEFLPFY 
       160        170        180        190        200
ALPFVPNPMV HPSFKELFQD SWTPELKLKL EKFLALTFKA NNTPKLLTIY 
       210        220        230        240        250
KENGPNSKEL LQQLHQQLVE AERRAMTYLK RYNKIQADYH NLIGVTAELV 
       260        270        280        290        300
DSLEATVSGK MITPEYLQSV CVRLFSNQMR QSLAHSVDFT RPGTASTMLR 
       310        320        330        340        350
ASLAPEKLKD VPLLPSLDYE KLKKDLIWGS DRLKAFLLQA LRWRLTTSHP 
       360        370        380        390        400
GEQRETVLQA YISNDLLDCH SHNQRSVLQL LHSKSEAVRQ YMARLINALA 
       410        420        430        440        450
SLAEGRLYLA QNTKVLRMLE GRLKEEDKDV ITRENVLGAL QKFSLRRPLQ 
       460        470        480        490        500
TAMIRDGLIF WLIDLLKDPD CLSDYTLEYS VALLMNLCLR SAGKNMCAKV 
       510        520        530        540        550
AGLMLKVLSD LLGHENHEIQ PYVNGALYSI LSIPSIREEA RAMGMEDILR 
       560        570        580        590        600
CFIKEGNAEM IRQIEFIIKQ LNSEDLLDGV LESDDDEDED DEEDHDIMEA 
       610        620        630        640        650
DLDKDELIQP QLGELSGEKL LTTEYLGIMT NTGKARRKGP ASVQWSGDEP 
       660        670        680        690        700
LRRPVTPGGH RTGCPVLGDH LISPQNAQQA RNGCLRAMPV AHPDDYKEGK 
       710        720        730        740        750
PGVTGCGTSS SFMDHKPREW SPAGHQKSRL VPTAALGWPR EMTQDPSSGH 
       760        770        780        790        800
ITREFVPAFT CKPQVPSTPE TVEQNPLKAK ALSLAPQFSS SGPQQASRPA 
       810 
STASSTRGLH SSQSIRK
Length:817
Mass (Da):91,922
Last modified:June 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i0E1F2899F9287A23
GO
Isoform 2 (identifier: Q9D2I5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     667-817: Missing.

Show »
Length:666
Mass (Da):75,760
Checksum:i622AE03ACA18CDBC
GO
Isoform 3 (identifier: Q9D2I5-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     712-712: F → SV

Show »
Length:818
Mass (Da):91,961
Checksum:i5B1A5EA13293B03E
GO
Isoform 4 (identifier: Q9D2I5-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     712-731: FMDHKPREWSPAGHQKSRLV → CKNAVGAKPVLSSWAQESKR
     732-817: Missing.

Show »
Length:731
Mass (Da):82,549
Checksum:iA3011EDFCD7BC55C
GO
Isoform 5 (identifier: Q9D2I5-5) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     574-574: Missing.

Show »
Length:816
Mass (Da):91,793
Checksum:i18DD2431B0244F23
GO
Isoform 6 (identifier: Q9D2I5-6) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-559: Missing.
     712-731: FMDHKPREWSPAGHQKSRLV → CKNAVGAKPVLSSWAQESKR
     732-817: Missing.

Show »
Length:172
Mass (Da):18,766
Checksum:i5126BEEEB893CDC7
GO
Isoform 7 (identifier: Q9D2I5-7) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-235: Missing.
     236-236: Q → M
     712-731: FMDHKPREWSPAGHQKSRLV → CKNAVGAKPVLSSWAQESKR
     732-817: Missing.

Show »
Length:496
Mass (Da):55,335
Checksum:iE1ED3F63CB120A3F
GO
Isoform 8 (identifier: Q9D2I5-8) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     295-314: ASTMLRASLAPEKLKDVPLL → GTEDWAEKGDHISKPKRGTR
     315-817: Missing.

Show »
Length:314
Mass (Da):35,993
Checksum:i0A6EF47C479290FB
GO
Isoform 9 (identifier: Q9D2I5-9) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     201-205: KENGP → VSFMK
     206-817: Missing.

Show »
Length:205
Mass (Da):23,617
Checksum:i1C0C929D820B17EB
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F7B303F7B303_MOUSE
LisH domain-containing protein ARMC...
Armc9
254Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F6QPP0F6QPP0_MOUSE
LisH domain-containing protein ARMC...
Armc9
145Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A087WNY0A0A087WNY0_MOUSE
LisH domain-containing protein ARMC...
Armc9
107Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F7AY77F7AY77_MOUSE
LisH domain-containing protein ARMC...
Armc9
63Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti36K → Q in BAC26890 (PubMed:16141072).Curated1
Sequence conflicti153P → T in BAC33231 (PubMed:16141072).Curated1
Sequence conflicti277N → K in BAC26890 (PubMed:16141072).Curated1
Sequence conflicti427D → G in BAC29299 (PubMed:16141072).Curated1
Sequence conflicti437L → I in BAC32462 (PubMed:16141072).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0238051 – 559Missing in isoform 6. 1 PublicationAdd BLAST559
Alternative sequenceiVSP_0238061 – 235Missing in isoform 7. 1 PublicationAdd BLAST235
Alternative sequenceiVSP_023807201 – 205KENGP → VSFMK in isoform 9. 1 Publication5
Alternative sequenceiVSP_023808206 – 817Missing in isoform 9. 1 PublicationAdd BLAST612
Alternative sequenceiVSP_023809236Q → M in isoform 7. 1 Publication1
Alternative sequenceiVSP_023810295 – 314ASTML…DVPLL → GTEDWAEKGDHISKPKRGTR in isoform 8. 1 PublicationAdd BLAST20
Alternative sequenceiVSP_023813315 – 817Missing in isoform 8. 1 PublicationAdd BLAST503
Alternative sequenceiVSP_023811574Missing in isoform 5. 1 Publication1
Alternative sequenceiVSP_023812667 – 817Missing in isoform 2. 1 PublicationAdd BLAST151
Alternative sequenceiVSP_023814712 – 731FMDHK…KSRLV → CKNAVGAKPVLSSWAQESKR in isoform 4, isoform 6 and isoform 7. 2 PublicationsAdd BLAST20
Alternative sequenceiVSP_023815712F → SV in isoform 3. 1 Publication1
Alternative sequenceiVSP_023816732 – 817Missing in isoform 4, isoform 6 and isoform 7. 2 PublicationsAdd BLAST86

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AK017564 mRNA Translation: BAB30807.1
AK019512 mRNA Translation: BAB31770.1
AK019600 mRNA Translation: BAB31811.1
AK030307 mRNA Translation: BAC26890.1
AK036083 mRNA Translation: BAC29299.1
AK039800 mRNA Translation: BAC30457.1
AK046693 mRNA Translation: BAC32837.1
AK045699 mRNA Translation: BAC32462.1
AK048064 mRNA Translation: BAC33231.1
AK076239 mRNA Translation: BAC36270.1
AK161393 mRNA Translation: BAE36370.1
BC028964 mRNA Translation: AAH28964.1
BC043101 mRNA Translation: AAH43101.1

The Consensus CDS (CCDS) project

More...CCDSi		CCDS15118.1 [Q9D2I5-1]
CCDS48303.1 [Q9D2I5-2]
CCDS78642.1 [Q9D2I5-3]

NCBI Reference Sequences

More...RefSeqi		NP_001297631.1, NM_001310702.1 [Q9D2I5-3]
NP_081732.1, NM_027456.2 [Q9D2I5-2]
NP_084460.1, NM_030184.2 [Q9D2I5-1]
XP_006530019.1, XM_006529956.3 [Q9D2I5-5]

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENSMUST00000027434; ENSMUSP00000027434; ENSMUSG00000062590 [Q9D2I5-1]
ENSMUST00000113309; ENSMUSP00000108934; ENSMUSG00000062590 [Q9D2I5-3]
ENSMUST00000131412; ENSMUSP00000117267; ENSMUSG00000062590 [Q9D2I5-2]

Database of genes from NCBI RefSeq genomes

More...GeneIDi		78795

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		mmu:78795

UCSC genome browser

More...UCSCi		uc007bva.1 mouse [Q9D2I5-9]
uc007bvb.1 mouse [Q9D2I5-8]
uc007bvc.1 mouse [Q9D2I5-1]
uc007bvf.1 mouse [Q9D2I5-4]
uc007bvh.1 mouse [Q9D2I5-5]
uc007bvi.1 mouse [Q9D2I5-3]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK017564 mRNA Translation: BAB30807.1
AK019512 mRNA Translation: BAB31770.1
AK019600 mRNA Translation: BAB31811.1
AK030307 mRNA Translation: BAC26890.1
AK036083 mRNA Translation: BAC29299.1
AK039800 mRNA Translation: BAC30457.1
AK046693 mRNA Translation: BAC32837.1
AK045699 mRNA Translation: BAC32462.1
AK048064 mRNA Translation: BAC33231.1
AK076239 mRNA Translation: BAC36270.1
AK161393 mRNA Translation: BAE36370.1
BC028964 mRNA Translation: AAH28964.1
BC043101 mRNA Translation: AAH43101.1
CCDSiCCDS15118.1 [Q9D2I5-1]
CCDS48303.1 [Q9D2I5-2]
CCDS78642.1 [Q9D2I5-3]
RefSeqiNP_001297631.1, NM_001310702.1 [Q9D2I5-3]
NP_081732.1, NM_027456.2 [Q9D2I5-2]
NP_084460.1, NM_030184.2 [Q9D2I5-1]
XP_006530019.1, XM_006529956.3 [Q9D2I5-5]

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

BioGridi219638, 1 interactor
STRINGi10090.ENSMUSP00000108934

PTM databases

iPTMnetiQ9D2I5
PhosphoSitePlusiQ9D2I5

Proteomic databases

PaxDbiQ9D2I5
PRIDEiQ9D2I5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000027434; ENSMUSP00000027434; ENSMUSG00000062590 [Q9D2I5-1]
ENSMUST00000113309; ENSMUSP00000108934; ENSMUSG00000062590 [Q9D2I5-3]
ENSMUST00000131412; ENSMUSP00000117267; ENSMUSG00000062590 [Q9D2I5-2]
GeneIDi78795
KEGGimmu:78795
UCSCiuc007bva.1 mouse [Q9D2I5-9]
uc007bvb.1 mouse [Q9D2I5-8]
uc007bvc.1 mouse [Q9D2I5-1]
uc007bvf.1 mouse [Q9D2I5-4]
uc007bvh.1 mouse [Q9D2I5-5]
uc007bvi.1 mouse [Q9D2I5-3]

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		80210
MGIiMGI:1926045 Armc9

Phylogenomic databases

eggNOGiENOG410IGND Eukaryota
ENOG410YSH6 LUCA
GeneTreeiENSGT00390000018026
InParanoidiQ9D2I5
KOiK22864
OMAiDSGDQKV
OrthoDBi1327587at2759
PhylomeDBiQ9D2I5
TreeFamiTF317676

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...ChiTaRSi		Armc9 mouse

Protein Ontology

More...PROi		PR:Q9D2I5

The Stanford Online Universal Resource for Clones and ESTs

More...SOURCEi		Search...

Gene expression databases

BgeeiENSMUSG00000062590 Expressed in 187 organ(s), highest expression level in testis
ExpressionAtlasiQ9D2I5 baseline and differential
GenevisibleiQ9D2I5 MM

Family and domain databases

Gene3Di1.25.10.10, 1 hit
InterProiView protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR040369 ARMC9
IPR006594 LisH
PANTHERiPTHR14881 PTHR14881, 1 hit
SMARTiView protein in SMART
SM00667 LisH, 1 hit
SUPFAMiSSF48371 SSF48371, 1 hit
PROSITEiView protein in PROSITE
PS50896 LISH, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiARMC9_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9D2I5
Secondary accession number(s): Q8BQQ3
, Q8BR45, Q8BSX7, Q8C6A6, Q8C889, Q8CA23, Q8CBG2, Q8K112, Q9CYL1, Q9D2L3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 20, 2007
Last sequence update: June 1, 2001
Last modified: May 8, 2019
This is version 122 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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